diff --git a/HIV_model_5.m b/Legacy Code/HIV_model_5.m similarity index 96% rename from HIV_model_5.m rename to Legacy Code/HIV_model_5.m index 2c77898..aba9672 100644 --- a/HIV_model_5.m +++ b/Legacy Code/HIV_model_5.m @@ -36,8 +36,8 @@ % Initial Conditions % P(01) = virion i.c. [log(/mL)] -% P(02) = CD8+ T cell (R+A+E) i.c. [/µL] -% P(03) = NK cell i.c. [/µL] +% P(02) = CD8+ T cell (R+A+E) i.c. [/ç„¡] +% P(03) = NK cell i.c. [/ç„¡] % Pharmacokinetic Parameters % P(04) = N803 injection site i.c. [pmol/kg] @@ -58,7 +58,7 @@ % Parameters governing R,K proliferation and death % P(16) = R death rate constant [/d] % P(17) = K " -% P(18) = R max proliferating concentration [/µL] +% P(18) = R max proliferating concentration [/ç„¡] % P(19) = K " % P(20) = R drug-induced proliferation factor [/d] % P(21) = K " @@ -70,12 +70,12 @@ % P(25) = E initial killing rate (a_E * E_0) [/d] % P(26) = K " % P(27) = R drug-induced activation factor [/d] -% P(28) = E drug-induced killing factor [µL/d] +% P(28) = E drug-induced killing factor [ç„¡/d] % P(29) = K " % P(30) = R activation suppression factor [] % P(31) = E killing suppression factor [] % P(32) = K " -% P(33) = R half-activation virus concentration [/µL] +% P(33) = R half-activation virus concentration [/ç„¡] % Parameters governing CD8+ T cell clonal expansion and retraction % P(34) = A death rate constant [/d] @@ -85,10 +85,10 @@ % P(38) = E deactivation rate constant [/d] % Parameters governing CD4+ T cells -% P(39) = CD4+ T cell i.c. [/µL] +% P(39) = CD4+ T cell i.c. [/ç„¡] % P(40) = T death rate constant [/d] -% P(41) = T max proliferating concentration [/µL] -% P(42) = T infection rate constant [/µL-d] +% P(41) = T max proliferating concentration [/ç„¡] +% P(42) = T infection rate constant [/ç„¡-d] % P(43) = infected T decay rate constant [*(P(40)] %% ======================================================================== @@ -97,9 +97,9 @@ % Y_MAIN = model output at each time point in 'SolTimes' % Y_MAIN(:,1) = virion [log(#/mL)] -% Y_MAIN(:,2) = CD8+ T cell (R+A+E) [/µL] -% Y_MAIN(:,3) = NK cell [/µL] -% Y_MAIN(:,4) = CD4+ T cell [/µL] +% Y_MAIN(:,2) = CD8+ T cell (R+A+E) [/ç„¡] +% Y_MAIN(:,3) = NK cell [/ç„¡] +% Y_MAIN(:,4) = CD4+ T cell [/ç„¡] % Y_ALL = cell array of extra outputs (see 'output' section) @@ -133,7 +133,7 @@ % ------------------------------------------------------------------------- % Declare initial conditions & calculated parameters ---------------------- -V0 = 10^(P(01)-3) ;% convert V i.c. to [/µL] +V0 = 10^(P(01)-3) ;% convert V i.c. to [/ç„¡] % calculate i.c. for CD8+ T cell subsets (R,A,E) CD8TCOEFS = [ ones(1,P(36)+2) ; zeros(P(36)+1,P(36)+2) ] ; @@ -156,7 +156,7 @@ % redefine P(25:26) as E,K per-capita killing rate constants P(25:26) = P(25:26)./ Yic(6:7) ; -% (infection rate constant) * (infected cell to virus conversion) [/µL-d] +% (infection rate constant) * (infected cell to virus conversion) [/ç„¡-d] beta = ( P(40)*P(43) + sum(P(25:26).*Yic(6:7)) ) / Yic(8) ; % calculate [R;K;T] proliferation rate [/d] @@ -305,9 +305,9 @@ Y = abs(Y) ;% removing negatives resulting from numerical error Y_MAIN(:,1) = log10(Y(:,9))+3 ;% virion [log(#/mL)] -Y_MAIN(:,2) = sum(Y(:,[5,6,10:in(1)]),2) ;% CD8+ T cell (R+A+E) [/µL] -Y_MAIN(:,3) = Y(:,7) ;% NK cell [/µL] -Y_MAIN(:,4) = Y(:,8) ;% CD4+ T cell [/µL] +Y_MAIN(:,2) = sum(Y(:,[5,6,10:in(1)]),2) ;% CD8+ T cell (R+A+E) [/ç„¡] +Y_MAIN(:,3) = Y(:,7) ;% NK cell [/ç„¡] +Y_MAIN(:,4) = Y(:,8) ;% CD4+ T cell [/ç„¡] % ------------------------------------------------------------------------- % Prepare extra outputs 'Y_ALL' ----------------------------------------- @@ -467,4 +467,4 @@ Y_ALL{20}{3,1}(n) = Yn(4) ; end -end \ No newline at end of file +end