diff --git a/N803_model_2.m b/N803_model_2.m index 6410fd4..1632fee 100644 --- a/N803_model_2.m +++ b/N803_model_2.m @@ -1,7 +1,7 @@ %% N803_model_2.m - solves ODE model for N-803 treatment of SIV % % /--------------------------------------------------------------\ -% | Date: 10/31/2021 | +% | Date: 11/05/2021 | % | Author: Jonathan Cody | % | Affiliation: Purdue University | % | Weldon School of Biomedical Engineering | @@ -10,6 +10,8 @@ % % Version 2D+ (also allowing regulation calibration) % +% 12/03/2021 - added some extra terms to the full output matrix +% % Nomenclature: V = SIV virions [#/µL] % E0 = resting SIV-specific CD8+ T cells [#/µL] % Ea = active SIV-specific CD8+ T cells [#/µL] @@ -252,6 +254,18 @@ % Ba killing proportion Y_OUT(:,37) = gB0*Ba./(1+gB2*R) ./ Kill ; +% Average E proliferation rate +Y_OUT(:,38) = ( p0*F(:,15).*E0 + pE*sum( Y(:,03:9) ,2) ) ./ (E0+Ea) ; + +% Average B proliferation rate +Y_OUT(:,39) = ( p0*F(:,15).*B0 + pB*Y(:,12) ) ./ (B0+Ba) ; + +% Average E killing rate +Y_OUT(:,40) = gE0*Ea./(1+gE2*R) ./ (E0+Ea) ; + +% Average B killing rate +Y_OUT(:,41) = gB0*Ba./(1+gB2*R) ./ (B0+Ba) ; + %% ======================================================================== % NESTED FUNCTIONS % ======================================================================== @@ -305,7 +319,7 @@ dY(4:9)= 2*pE*Ea(1:6) - dA*Ea(2:7) - pE*Ea(2:7) ;% dE2-7/dt dY(10) = 2*pE*Ea(7) - dA*Ea(8) - mE*Ea(8) ;% dE8/dt dY(11) = p*B0 - aB*B0 - d*B0 + mB*Ba(2) ;% dB0/dt - dY(12) = + aB*B0 - dA*Ba(2) - pB*Ba(1) ;% dB1/dt !!!!! dA*Ba(1) !!!!! + dY(12) = + aB*B0 - dA*Ba(1) - pB*Ba(1) ;% dB1/dt dY(13) = 2*pB*Ba(1) - dA*Ba(2) - mB*Ba(2) ;% dB2/dt dY(14) = - ka*X ;% dX/dt dY(15) = ka*X/vd - ke*C ;% dC/dt