From 8c4cc643e128d777436cbbd130d2fdfdd28f27a7 Mon Sep 17 00:00:00 2001
From: "Cody, Jonathan William" <cody2@purdue.edu>
Date: Mon, 15 May 2023 11:48:48 -0500
Subject: [PATCH] Add files via upload

---
 N803_collector_2.m | 10 ++++++++--
 N803_plotter_2.m   |  7 +++++++
 2 files changed, 15 insertions(+), 2 deletions(-)

diff --git a/N803_collector_2.m b/N803_collector_2.m
index a972fc4..9064027 100644
--- a/N803_collector_2.m
+++ b/N803_collector_2.m
@@ -1,9 +1,12 @@
-% collector.m - collects outputs from model calibration and UQ
+% N803_collector_2.m - collects outputs from model calibration and UQ
 addpath Data
 
 % This script will load the MCMC parameter samples or MSLS parameter sets,
 % solve the ODE model, and store the results.
 
+% To replicate the main text ONLY, first run 'main_shared_2_calibration.m'.
+% Then edit this file per instructions on line 171.
+
 %% ========================================================================
 %   INPUTS
 %  ========================================================================
@@ -165,8 +168,11 @@
 
 disp('Collecting...') ;
 
+% To replicate main text results only, replace n = 1:24 on line 175 with 
+% n = [ 1,2,19:24 ]
+
 % For each model...
-for n = 22:24
+for n = 1:24
     
     disp(C(n).Scenario) ;
     
diff --git a/N803_plotter_2.m b/N803_plotter_2.m
index c6ca6e3..d935c5e 100644
--- a/N803_plotter_2.m
+++ b/N803_plotter_2.m
@@ -6,6 +6,10 @@
 % This script will generate all figure panels using the model outputs saved
 % by 'collector.m' and using custom plotting function 'gridplot.m'.
 
+% To replicate the main text ONLY, first run 'main_shared_2_calibration.m'.
+% Then run 'N803_collector_2' per instructions on line 7 of that file.
+% Then edit this file per instructions on line 28.
+
 %% ========================================================================
 %   BODY
 %  ========================================================================
@@ -21,6 +25,9 @@
 Color([6,18:26 ]) = { [ 0 1 2 ]/2.4 } ;
 Color([3,4,7:16]) = { [ 1 1 1 ]/5   } ;
 
+% To produce main text figures, replace Fig = 3:.5:22 on line 33 with ...
+% Fig = 3:.5:11
+
 % Loop through 'Fig' and create each figure 
 % NOTE: 'for' indent is removed
 for Fig = 3:.5:22