From 8f7f50b7b576e9872aaf93ef3723b23f1bbf6b4f Mon Sep 17 00:00:00 2001 From: Jonathan William Cody Date: Sun, 30 Jun 2019 18:30:54 -0400 Subject: [PATCH] Rename HIV_model_3.m to Legacy Code/HIV_model_3.m --- HIV_model_3.m => Legacy Code/HIV_model_3.m | 28 +++++++++++----------- 1 file changed, 14 insertions(+), 14 deletions(-) rename HIV_model_3.m => Legacy Code/HIV_model_3.m (96%) diff --git a/HIV_model_3.m b/Legacy Code/HIV_model_3.m similarity index 96% rename from HIV_model_3.m rename to Legacy Code/HIV_model_3.m index 7ceba4a..4c275ac 100644 --- a/HIV_model_3.m +++ b/Legacy Code/HIV_model_3.m @@ -33,8 +33,8 @@ % -> NOTE: parameter pairs are for E and K, respectively % P(01) = V i.c. [log(/mL)] -% P(02) = E i.c. [/µL] -% P(03) = K i.c. [/µL] +% P(02) = E i.c. [/ç„¡] +% P(03) = K i.c. [/ç„¡] % P(04) = Q i.c. [pmol/kg] % P(05) = C absorption rate constant [/d] @@ -43,10 +43,10 @@ % P(08) = death rate constant [/d] % P(09) -% P(10) = max proliferating concentration [/µL] +% P(10) = max proliferating concentration [/ç„¡] % P(11) -% P(12) = killing rate constant [µL/d] +% P(12) = killing rate constant [ç„¡/d] % P(13) % P(14) = drug killing modifier % P(15) @@ -68,13 +68,13 @@ % P(28) = escape mutation rate [] % P(29) = initial escape proportion [] -% P(30) = response activation threshold [/µL] +% P(30) = response activation threshold [/ç„¡] % P(31) = response proliferation rate constant [/d] -% P(32) = T i.c. [/µL] +% P(32) = T i.c. [/ç„¡] % P(33) = T death rate constant [/d] -% P(34) = T max proliferating concentration [/µL] -% P(35) = T infection rate constant [/µL-d] +% P(34) = T max proliferating concentration [/ç„¡] +% P(35) = T infection rate constant [/ç„¡-d] % P(36) = infected T decay rate constant [*(P(33)] % Delays = number of delay chambers for: @@ -91,9 +91,9 @@ % Y_MAIN = model output at each time point in 'SolTimes' % Y_MAIN(:,1) = V [log(#/mL)] -% Y_MAIN(:,2) = E [/µL] -% Y_MAIN(:,3) = K [/µL] -% Y_MAIN(:,4) = T [/µL] +% Y_MAIN(:,2) = E [/ç„¡] +% Y_MAIN(:,3) = K [/ç„¡] +% Y_MAIN(:,4) = T [/ç„¡] % Y_EXTRA = cell array of extra outputs (see 'output' section) @@ -146,7 +146,7 @@ % ------------------------------------------------------------------------- % Declare initial conditions & calculated parameters ---------------------- -V = 10^(P(01)-3) ;% converting V i.c. to [/µL] +V = 10^(P(01)-3) ;% converting V i.c. to [/ç„¡] V = V *10^(3*mutanum) ;% scaling up V to avoid rounding errors P(30) = P(30) *10^(3*mutanum) ; @@ -308,7 +308,7 @@ Y = abs(Y) ;% removing negatives resulting from numerical error Y_MAIN(:,1) = log10(sum(Y(:,10:mutend),2))+3 ;% V [log(#/mL)] -Y_MAIN(:,2:4) = Y(:,7:9) ;% E:K:T [/µL] +Y_MAIN(:,2:4) = Y(:,7:9) ;% E:K:T [/ç„¡] % ------------------------------------------------------------------------- % Prepare extra outputs 'Y_EXTRA' ----------------------------------------- @@ -418,4 +418,4 @@ Y_EXTRA{15}{3,1}(n) = Y(n,6) ; end -end \ No newline at end of file +end