diff --git a/HIV_model_2.m b/Legacy Code/HIV_model_2.m similarity index 96% rename from HIV_model_2.m rename to Legacy Code/HIV_model_2.m index 37ea783..88b7264 100644 --- a/HIV_model_2.m +++ b/Legacy Code/HIV_model_2.m @@ -34,8 +34,8 @@ % -> NOTE: parameter pairs are for E and K, respectively % P(01) = V i.c. [log(/mL)] -% P(02) = E i.c. [/µL] -% P(03) = K i.c. [/µL] +% P(02) = E i.c. [/ç„¡] +% P(03) = K i.c. [/ç„¡] % P(04) = N i.c. [pmol/kg] % P(05) = C absorption rate const. [/d] @@ -44,10 +44,10 @@ % P(08) = death rate constant [/d] % P(09) -% P(10) = maximum concentration [/µL] +% P(10) = maximum concentration [/ç„¡] % P(11) -% P(12) = killing rate constant [µL/d] +% P(12) = killing rate constant [ç„¡/d] % P(13) % P(14) = Ce killing modifier [] % P(15) @@ -56,7 +56,7 @@ % P(17) % P(18) = constant IL15 factor [pM] % P(19) -% P(20) = V-dep IL15 factor [pM*µL] +% P(20) = V-dep IL15 factor [pM*ç„¡] % P(21) % P(22) = Ct max level [] @@ -71,13 +71,13 @@ % P(30) = escape mutation rate [] % P(31) = initial escape proportion [] -% P(32) = response activation threshold [/µL] +% P(32) = response activation threshold [/ç„¡] % P(33) = response prolif. rate const. [/d] -% P(34) = T i.c. [/µL] +% P(34) = T i.c. [/ç„¡] % P(35) = T death rate constant [/d] -% P(36) = T maximum concentration [/µL] -% P(37) = T infection rate constant [/µL-d] +% P(36) = T maximum concentration [/ç„¡] +% P(37) = T infection rate constant [/ç„¡-d] % P(38) = infected T decay rate constant [*(P(35)] % EquatedPars = vector of indices in 'P' used for equating parameter values @@ -91,9 +91,9 @@ % Y_MAIN = model output at each time point in 'SolTimes' % Y_MAIN(:,1) = V [log(#/mL)] -% Y_MAIN(:,2) = E [/µL] -% Y_MAIN(:,3) = K [/µL] -% Y_MAIN(:,4) = T [/µL] +% Y_MAIN(:,2) = E [/ç„¡] +% Y_MAIN(:,3) = K [/ç„¡] +% Y_MAIN(:,4) = T [/ç„¡] % Y_EXTRA = cell array of extra outputs (see 'output' section) @@ -131,7 +131,7 @@ % ------------------------------------------------------------------------- % Declare initial conditions & calculated parameters ---------------------- -V = 10^(P(01)-3) ;% converting V i.c. to [/µL] +V = 10^(P(01)-3) ;% converting V i.c. to [/ç„¡] V = V *10^(3*mutanum) ;% scaling up V to avoid rounding errors P(20:21) = P(20:21)/10^(3*mutanum) ;% scaling parameters to match @@ -280,7 +280,7 @@ Y = abs(Y) ;% removing negatives resulting from numerical error Y_MAIN(:,1) = log10(sum(Y(:,10:10+mutanum),2))+3 ;% V [log(#/mL)] -Y_MAIN(:,2:4) = Y(:,7:9) ;% E:K:T [/µL] +Y_MAIN(:,2:4) = Y(:,7:9) ;% E:K:T [/ç„¡] % ------------------------------------------------------------------------- % Prepare extra outputs 'Y_EXTRA' ----------------------------------------- @@ -385,4 +385,4 @@ Y_EXTRA{15}{3,1}(n) = funOn(2) ; end -end \ No newline at end of file +end