From b269bba9be528073ef5f48b7e9419078cc2d83bc Mon Sep 17 00:00:00 2001 From: "Cody, Jonathan William" Date: Sun, 25 Dec 2022 08:44:10 -0600 Subject: [PATCH] Rename ICsolvers/N803_single.m to N803_single.m --- ICsolvers/N803_single.m => N803_single.m | 38 ++++++++++++------------ 1 file changed, 19 insertions(+), 19 deletions(-) rename ICsolvers/N803_single.m => N803_single.m (89%) diff --git a/ICsolvers/N803_single.m b/N803_single.m similarity index 89% rename from ICsolvers/N803_single.m rename to N803_single.m index 88e5d1b..b42ec48 100644 --- a/ICsolvers/N803_single.m +++ b/N803_single.m @@ -8,12 +8,12 @@ % | Pienaar Computational Systems Pharmacology Lab | % \--------------------------------------------------------------/ % -% Nomenclature: V = SIV virions [#/µL] -% T8 = total CD8+ T cells [#/µL] -% S0 = resting SIV-specific CD8+ T cells [#/µL] -% Sa = active SIV-specific CD8+ T cells [#/µL] -% N0 = resting non-SIV-specific CD8+ T cells [#/µL] -% Na = active non-SIV-specific CD8+ T cells [#/µL] +% Nomenclature: V = SIV virions [#/ç„¡] +% T8 = total CD8+ T cells [#/ç„¡] +% S0 = resting SIV-specific CD8+ T cells [#/ç„¡] +% Sa = active SIV-specific CD8+ T cells [#/ç„¡] +% N0 = resting non-SIV-specific CD8+ T cells [#/ç„¡] +% Na = active non-SIV-specific CD8+ T cells [#/ç„¡] % X = N803 at absorption site [pmol/kg] % C = N803 plasma concentration [pM] % R = regulation [] (dimensionless quantity) @@ -59,7 +59,7 @@ % Rename inputed parameters ----------------------------------------------- Vi = AllPars(01) ;% V initial value [log(#/mL)] -SNi = AllPars(02) ;% S+N initial value [#/µL] +SNi = AllPars(02) ;% S+N initial value [#/ç„¡] fS = AllPars(03) ;% initial frequency: S/(S+N) fSA = AllPars(04) ;% initial frequency: Sa/S q = AllPars(05) ;% V growth rate (if S+N were absent) [/d] @@ -68,7 +68,7 @@ V50N = AllPars(08) ;% 50% viral stimulation saturation for N [#/mL] mSn = AllPars(09) ;% normalized Sa reversion rate constant [] mNn = AllPars(10) ;% normalized Na reversion rate constant [] -SN50 = AllPars(11) ;% 50% S+N proliferation saturation [#/µL] +SN50 = AllPars(11) ;% 50% S+N proliferation saturation [#/ç„¡] pS = AllPars(12) ;% Sa proliferation rate constant [/d] pN = AllPars(13) ;% Na proliferation rate constant [/d] d = AllPars(14) ;% S0/N0 death rate constant [/d] @@ -92,9 +92,9 @@ %% ------------------------------------------------------------------------ % Calculate some initial conditions & parameters -------------------------- -Vi = 10^(Vi-3) ;% V initial value [#/µL] -V50S = V50S/1000 ;% 50% viral stimulation saturation for S [#/µL] -V50N = V50N/1000 ;% 50% viral stimulation saturation for N [#/µL] +Vi = 10^(Vi-3) ;% V initial value [#/ç„¡] +V50S = V50S/1000 ;% 50% viral stimulation saturation for S [#/ç„¡] +V50N = V50N/1000 ;% 50% viral stimulation saturation for N [#/ç„¡] % restrict mS and mN such that initial activation aS and aN are positive US = 2*(2*pS/(pS+dA))^7 ; @@ -146,8 +146,8 @@ p0 = pi * (SN50+SNi)/SN50 * (1+p2) ;% S0/N0 proliferation rate con [/d] p1 = pm/p0 ;% S0/N0 proliferation stimulation factor -gS0 = q / ( SA/(1+gS2) + psi*NA/(1+gN2) ) ;% Sa killing rate con [µL/#-d] -gN0 = psi*gS0 ;% Na killing rate constant [µL/#-d] +gS0 = q / ( SA/(1+gS2) + psi*NA/(1+gN2) ) ;% Sa killing rate con [ç„¡/#-d] +gN0 = psi*gS0 ;% Na killing rate constant [ç„¡/#-d] sS = dR / ( Vi/(V50S+Vi) + sig*Vi/(V50N+Vi) ) ;% regulation gen by S act sN = sig*sS ;% regulation generation by N activation @@ -156,17 +156,17 @@ % Prepare parameter and initial value vectors and call 'N803_model_2' ----- Pars(01) = q ;% V growth rate (if S+N were absent) [/d] -Pars(02) = gS0 ;% Sa killing rate constant [µL/#-d] -Pars(03) = gN0 ;% Na killing rate constant [µL/#-d] +Pars(02) = gS0 ;% Sa killing rate constant [ç„¡/#-d] +Pars(03) = gN0 ;% Na killing rate constant [ç„¡/#-d] -Pars(04) = V50S ;% 50% viral stimulation saturation for S [#/µL] -Pars(05) = V50N ;% 50% viral stimulation saturation for N [#/µL] +Pars(04) = V50S ;% 50% viral stimulation saturation for S [#/ç„¡] +Pars(05) = V50N ;% 50% viral stimulation saturation for N [#/ç„¡] Pars(06) = aS0 ;% S0 activation rate constant [/d] Pars(07) = aN0 ;% N0 activation rate constant [/d] Pars(08) = mS ;% Sa reversion rate constant [/d] Pars(09) = mN ;% Na reversion rate constant [/d] -Pars(10) = SN50 ;% 50% S+N proliferation saturation [#/µL] +Pars(10) = SN50 ;% 50% S+N proliferation saturation [#/ç„¡] Pars(11) = p0 ;% S0/N0 proliferation rate constant [/d] Pars(12) = pS ;% Sa proliferation rate constant [/d] Pars(13) = pN ;% Na proliferation rate constant [/d] @@ -214,4 +214,4 @@ Pars = [ Pars Yic ] ;% adding initial conditions to parameter output -end \ No newline at end of file +end