From d3ce8dbd6cb870a3c42d0205a2fc9acb89aaede0 Mon Sep 17 00:00:00 2001 From: "Cody, Jonathan William" Date: Sun, 25 Dec 2022 08:49:10 -0600 Subject: [PATCH] Update README.md --- README.md | 20 ++------------------ 1 file changed, 2 insertions(+), 18 deletions(-) diff --git a/README.md b/README.md index 0a26f97..a5e01a9 100644 --- a/README.md +++ b/README.md @@ -5,22 +5,6 @@ Multi-scale model of viral and immune dynamics in response to treatment with IL- 'N803_model_2.m' = single-compartment model for article 2 -'sorter.m' = function that sorts results from 'calibrator.m' by outcome +'N803_shared.m' = calls 'N803_model_2.m', but first solves for ICs and shared parameters to start from two fixed points -'Legacy Code' = folder for older versions of code that has either been condensed or moved to another repository - - 'HIV_model_5.m' = version 5 (seperates CD8+ T cells into resting, active-proliferating, and active-effector populations) - - 'HIV_model_4.m' = version 4 (adds density-dependent drug-induced proliferation and immune suppression of effector population) - - 'HIV_model_3.m' = version 3 of simplified model (removed IL15 and adds tolerance and exhaustion delay compartments) - - 'HIV_model_2.m' = version 2 of simplified model (homeostasis by density-dependent proliferation rather than generation) - - 'HIV_model_1.m' = simplified model used in BMES2018 poster - - 'plotter_model_5.m' = function that plot results from 'calibrator.m' (specific to HIV_model_5) - - 'plotter_model_4.m' = function that plot results from 'calibrator.m' (specific to HIV_model_4) - - 'plotter.m' = function that plot results from 'calibrator.m' (specific to HIV_model_2) +'N803_single.m' = calls 'N803_model_2.m', but first solves for ICs and parameters to start from one fixed point