diff --git a/batchRuns/ODESGeneralizedImmunity.R b/batchRuns/ODESGeneralizedImmunity.R index b893ebe..235a119 100644 --- a/batchRuns/ODESGeneralizedImmunity.R +++ b/batchRuns/ODESGeneralizedImmunity.R @@ -771,15 +771,16 @@ allPara<-read.csv(paramFile,sep=",",header=T) currentPara<-allPara[allPara$No==No,] -t2 = seq(from=0,to=30*365,by=1) -N0 = c(PW_NU=100,PW_ND=0,PW_SU=0,PW_SD=0,PW_AU=0,PW_AD=0, - PR_NU=0,PR_ND=0,PR_SU=0,PR_SD=0,PR_AU=0,PR_AD=0, - NU=10000,ND=0,SU=0,SD=0,AU=0,AD=0, - b=allPara[1,]$bavgnull*(1-allPara[1,]$seasonality)) -for (i in 1:42){ - out9 = ode(y=N0,times=t2,func=SEAI_p,parms=allPara[i,]) - out9_freqRes[i] = (out9[,8]+out9[,9]+out9[,10]+out9[,11]+out9[,12]+out9[,13])/(out9[,2]+out9[,3]+out9[,4]+out9[,5]+out9[,6]+out9[,7]+out9[,8]+out9[,9]+out9[,10]+out9[,11]+out9[,12]+out9[,13]) -} +#t2 = seq(from=0,to=30*365,by=1) +#N0 = c(PW_NU=100,PW_ND=0,PW_SU=0,PW_SD=0,PW_AU=0,PW_AD=0, +# PR_NU=0,PR_ND=0,PR_SU=0,PR_SD=0,PR_AU=0,PR_AD=0, +# NU=10000,ND=0,SU=0,SD=0,AU=0,AD=0, +# b=allPara[1,]$bavgnull*(1-allPara[1,]$seasonality)) +#for (i in 1:42){ +# out9 = ode(y=N0,times=t2,func=SEAI_p,parms=allPara[i,]) +# out9_freqRes[i] = (out9[,8]+out9[,9]+out9[,10]+out9[,11]+out9[,12]+out9[,13])/(out9[,2]+out9[,3]+out9[,4]+out9[,5]+out9[,6]+out9[,7]+out9[,8]+out9[,9]+out9[,10]+out9[,11]+out9[,12]+out9[,13]) +#} +