From d7d2cd1b8f6d996053daefbf46ce617eef65d943 Mon Sep 17 00:00:00 2001 From: Qixin He Date: Fri, 11 Mar 2022 18:43:09 -0500 Subject: [PATCH] v2 new --- batchRuns/ODESImmunity_v2.R | 5 +- batchRuns/onelocus_paraList.csv | 12643 ++++++++++++++++++++++++++++++ 2 files changed, 12646 insertions(+), 2 deletions(-) create mode 100644 batchRuns/onelocus_paraList.csv diff --git a/batchRuns/ODESImmunity_v2.R b/batchRuns/ODESImmunity_v2.R index 9c1e452..5d6e692 100644 --- a/batchRuns/ODESImmunity_v2.R +++ b/batchRuns/ODESImmunity_v2.R @@ -6,6 +6,7 @@ paramFile<-args[1] No<-as.integer(args[2]) resultsFolder <-args[3] WildStrainOnly<-as.integer(args[4]) +jobid<-as.integer(args[5]) #paramFile<-"paramList.csv" #No<-1 #resultsFolder<-"./" @@ -425,11 +426,11 @@ out2<-out2%>%mutate(m_N = P_acc_N/(NU+ND),m_S =P_acc_S/(SU+SD), m_A = P_acc_A/(A outFile<-paste(resultsFolder,"/",strsplit(paramFile,split="[.]")[[1]][1],"_results.csv",sep="") if(file.exists(outFile)){ - write.table(as.data.frame(cbind(currentPara,tail(out2,1))), + write.table(as.data.frame(cbind(jobid,currentPara,tail(out2,1))), file = outFile, row.names=F, col.names=F,sep=",", quote=F,append=T) }else{ - write.csv(as.data.frame(cbind(currentPara,tail(out2,1))), + write.csv(as.data.frame(cbind(jobid,currentPara,tail(out2,1))), file = outFile, row.names=F, quote=F) diff --git a/batchRuns/onelocus_paraList.csv b/batchRuns/onelocus_paraList.csv new file mode 100644 index 0000000..069be4d --- /dev/null +++ b/batchRuns/onelocus_paraList.csv @@ -0,0 +1,12643 @@ +No,birth,att,muND,muNU,nstrains,rho1,rho2,omega,cloneCost,mixCost,ImmLost,capacity,muWU,muWD,muRD,muRU,Tau,d1,d2,d3,bavgnull,seasonality,dryWidth,phase,modelType +1,1,9.13e-05,0.1,0.1,10,0.5,0.05,0.01,0.1,0.9,0.000273973,10,0.006666667,0.99,0.006666667,0.006666667,20,1,1,1,0.01,0,1,0,onelocus_0 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