From afb2c9f036439711a9cdf003755c7b7d4e1077a1 Mon Sep 17 00:00:00 2001 From: David Minton Date: Wed, 7 Jun 2023 19:29:32 -0400 Subject: [PATCH] Added flags to ensure that host environment variables don't get passed down to the container in Apptainer/Singularity (which wreaks havoc on the RCAC cluster) --- apptainer/bin/swiftest | 2 +- singularity/bin/swiftest | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/apptainer/bin/swiftest b/apptainer/bin/swiftest index ca0fcfadd..5d91b80d6 100755 --- a/apptainer/bin/swiftest +++ b/apptainer/bin/swiftest @@ -1,4 +1,4 @@ #!/bin/sh -- OMP_NUM_THREADS=${OMP_NUM_THREADS:-`nproc --all`} FOR_COARRAY_NUM_IMAGES=${FOR_COARRAY_NUM_IMAGES:-1} -apptainer run --bind $(pwd):$(pwd) --env OMP_NUM_THREADS=${OMP_NUM_THREADS},FOR_COARRAY_NUM_IMAGES=${FOR_COARRAY_NUM_IMAGES} ${SWIFTEST_SIF} "$@" \ No newline at end of file +apptainer run --bind $(pwd):$(pwd) --cleanenv --env OMP_NUM_THREADS=${OMP_NUM_THREADS},FOR_COARRAY_NUM_IMAGES=${FOR_COARRAY_NUM_IMAGES} ${SWIFTEST_SIF} "$@" \ No newline at end of file diff --git a/singularity/bin/swiftest b/singularity/bin/swiftest index 8a5849e51..a384860fe 100755 --- a/singularity/bin/swiftest +++ b/singularity/bin/swiftest @@ -1,4 +1,4 @@ #!/bin/sh -- OMP_NUM_THREADS=${OMP_NUM_THREADS:-`nproc --all`} FOR_COARRAY_NUM_IMAGES=${FOR_COARRAY_NUM_IMAGES:-1} -singularity run --bind $(pwd):$(pwd) --env OMP_NUM_THREADS=${OMP_NUM_THREADS},FOR_COARRAY_NUM_IMAGES=${FOR_COARRAY_NUM_IMAGES} ${SWIFTEST_SIF} "$@" \ No newline at end of file +singularity run --bind $(pwd):$(pwd) --cleanenv --env OMP_NUM_THREADS=${OMP_NUM_THREADS},FOR_COARRAY_NUM_IMAGES=${FOR_COARRAY_NUM_IMAGES} ${SWIFTEST_SIF} "$@" \ No newline at end of file