This GitHub repository provides a comprehensive resource for analyzing high-throughput phenotyping (HTP) data from the Ag Alumni Seed Phenotyping Facility (AAPF, Purdue), including a detailed guide and a collection of data processing tools. It includes foundational R tools for transforming AAPF data products (RGB, hyperspectral, X-ray) into an analysis-ready dataset (long-format table). This standardized dataset can be directly used in statistical modeling and visualization using R.
- RGB imaging data (above-ground)
- Hyperspectral imaging (HSI) data (above-ground)
- X-ray computed tomography (CT) imaging data (below-ground, root system) (under construction 🚧)
- Reshape data product (masterfile, .xlsx) into analysis-ready format
- Plant trait assessment 📐
- Visualization 😎