From 0188c5ed5629185cea7ccca5ea042f0547ced3a7 Mon Sep 17 00:00:00 2001 From: "Oh, Sungchan" Date: Thu, 27 Jun 2024 16:42:59 -0400 Subject: [PATCH] Update DataGuide_AAPF_HSI.md --- DataGuide_AAPF_HSI.md | 22 +++++++++++++++++++--- 1 file changed, 19 insertions(+), 3 deletions(-) diff --git a/DataGuide_AAPF_HSI.md b/DataGuide_AAPF_HSI.md index ffd4c15..afbf5f7 100644 --- a/DataGuide_AAPF_HSI.md +++ b/DataGuide_AAPF_HSI.md @@ -11,12 +11,26 @@ This document details the file system organization and navigation procedures for #### Raw Scanned Data -Directories are named using a convention that incorporates both experiment number and treatment. - -- Example: 407_WL, 407_WW, 401_20-1, 401_20-2, 401_80. +- Parent directory + - {Experiment_Number}_{Treatment} + - Example: 407_WL, 407_WW, 401_20-1, 401_20-2, 401_80 #### Interim Data Product + +- Parent directory + - {Experiment_Number} + - Example: 401 +- Subdirectories (HSI data processing quality control data) + - {Parent_directory}/{quality_control} + - Example: 401/quality_control +- Subdirectories (compressed vegetation index images) + - {Parent_directory}/VI_images + - Example: 401/VI_images + + + + The interim data product consists of three primary components: - Masterfile (`Hyperspectral_data_AAPF_experiment_{Experiment_No}.xlsx`): This file stores the derived phenotypic measurements of the plants and a guide document. - HSI Data Processing Quality Control Data (`quality_control`): This directory contains information for quality assessment of the HSI data processing pipeline. It includes summaries of header information for plants, white and dark reference, a detailed record of the processing procedures employed, and animated gif files used to check coregistration quality between visible and near infrared (VNIR) and shortwave infrared (SWIR) data. @@ -25,6 +39,8 @@ The interim data product consists of three primary components: + + Example (does not contain all associated files): 401_80 ├── HSI_R_2401856_240606084952173_SWIR-SIDE-DAT_401_80_240606085015154.hdr