From 0d24d2ae26e53aa88a2e36f57f039eeda4656e94 Mon Sep 17 00:00:00 2001 From: "Oh, Sungchan" Date: Thu, 27 Jun 2024 16:35:30 -0400 Subject: [PATCH] Update DataGuide_AAPF_HSI.md --- DataGuide_AAPF_HSI.md | 21 ++++++++++++++------- 1 file changed, 14 insertions(+), 7 deletions(-) diff --git a/DataGuide_AAPF_HSI.md b/DataGuide_AAPF_HSI.md index b46ab9f..66bc6e5 100644 --- a/DataGuide_AAPF_HSI.md +++ b/DataGuide_AAPF_HSI.md @@ -11,7 +11,19 @@ This document details the file system organization and navigation procedures for #### Raw Scanned Data -Directories are named using a convention that incorporates both experiment number and treatment. Example: 407_WL, 407_WW, 401_20-1, 401_20-2, 401_80. +Directories are named using a convention that incorporates both experiment number and treatment. + + - Example: 407_WL, 407_WW, 401_20-1, 401_20-2, 401_80. + +#### Interim Data Product + +The interim data product consists of three primary components: + - Masterfile (`Hyperspectral_data_AAPF_experiment_{Experiment_No}.xlsx`): This file stores the derived phenotypic measurements of the plants and a guide document. + - HSI Data Processing Quality Control Data (`quality_control`): This directory contains information for quality assessment of the HSI data processing pipeline. It includes summaries of header information for plants, white and dark reference, a detailed record of the processing procedures employed, and animated gif files used to check coregistration quality between visible and near infrared (VNIR) and shortwave infrared (SWIR) data. + - Compressed Vegetation Index Images (`{Vegetation_Index_Type}_{ROI filter}.zip`: This section houses compressed image files for various types of vegetation indices calculated from the HSI data (ROI: region of interest). + + + Example (does not contain all associated files): 401_80 @@ -25,13 +37,8 @@ Directories are named using a convention that incorporates both experiment numbe └── HSI_R_2401856_240606084952173_SWIR-TOP-DAT_401_80_240606085006035.tiff -#### Interim Data Product -The interim data product consists of three primary components: - - Masterfile (`Hyperspectral_data_AAPF_experiment_{Experiment_No}.xlsx`): This file stores the derived phenotypic measurements of the plants and a guide document. - - HSI Data Processing Quality Control Data (`quality_control`): This directory contains information for quality assessment of the HSI data processing pipeline. It includes summaries of header information for plants, white and dark reference, a detailed record of the processing procedures employed, and animated gif files used to check coregistration quality between visible and near infrared (VNIR) and shortwave infrared (SWIR) data. - - Compressed Vegetation Index Images (`{Vegetation_Index_Type}_{ROI filter}.zip`: This section houses compressed image files for various types of vegetation indices calculated from the HSI data (ROI: region of interest). - + - Example (does not contain all associated files): 401 ├── Hyperspectral_data_AAPF_experiment_401.xlsx (masterfile)