From 54df97db30acd6e6c6a8e15d1dac69b9d28f9757 Mon Sep 17 00:00:00 2001 From: "Oh, Sungchan" Date: Thu, 27 Jun 2024 14:22:25 -0400 Subject: [PATCH] Update README_RGB.md --- README_RGB.md | 48 ++++++++++++++++++++++++++++++------------------ 1 file changed, 30 insertions(+), 18 deletions(-) diff --git a/README_RGB.md b/README_RGB.md index b166362..68d3706 100644 --- a/README_RGB.md +++ b/README_RGB.md @@ -67,11 +67,11 @@ These image files visually represent morphological measurements on the vegetatio -- Gray (pixels): vegetation pixels segmented -- Green (Polyline): Smallest enclosing rectangle of the vegetation segments -- Blue (Polyline): Convex hull (smallest enclosing polygon) of the vegetation segments -- Red (Pollyline): Pixel-wise boundary of vegetation segments -- Cyan (point): Center of mass coordinate +- `Gray (pixels)`: vegetation pixels segmented +- `Green (Polyline)`: Smallest enclosing rectangle of the vegetation segments +- `Blue (Polyline)`: Convex hull (smallest enclosing polygon) of the vegetation segments +- `Red (Pollyline)`: Pixel-wise boundary of vegetation segments +- `Cyan (point)`: Center of mass coordinate @@ -79,19 +79,31 @@ These image files visually represent morphological measurements on the vegetatio The spreadsheets contains various phenotypic measurements derived from the RGB images. Here's a breakdown of the column headers: -- `frame_nr`: Frame number from 0-11 for side view data -- `Angle`: Side view angle where the vegetation is most dispersed -- `Width`, `Height`: Dimensions of the green box in the corresponding MES file -- `Surface`: Area of the vegetation measured by the red polygon (Section 2) -- `Convex hull`: Area of the convex hull measured by the blue polygon -- `Roundedness`: Roundness of the red polygon (calculation method unclear) -- `Center_of_mass_distance`: Unclear meaning -- `Center_of_mass_x`, `Center_of_mass_y`: Coordinates of the center of mass point -- `Hue, Saturation`, Intensity: Average values for these color properties in the image -- `Fluorescence`: Average fluorescence intensity -- `H###`, `S##`, `V##`: Frequency of pixels with specific hue (###: 0-359), saturation (##: 0-99), and intensity (##: 0-99) values -- `F##`: Frequency of pixels with a specific fluorescence value (##: 0-99) -- `View`: +- `frame_nr` + - Frame number from 0-11 for side view data +- `Angle` + - Side view angle where the vegetation is most dispersed +- `Width`, `Height` + - Dimensions of the green box in the corresponding MES file +- `Surface` + - Area of the vegetation measured by the red polygon (Section 2) +- `Convex hull` + - Area of the convex hull measured by the blue polygon +- `Roundedness` + - Roundness of the red polygon (calculation method unclear) +- `Center_of_mass_distance` + - Unclear meaning +- `Center_of_mass_x`, `Center_of_mass_y` + - Coordinates of the center of mass point +- `Hue, Saturation`, `Intensity` + - Average values for these color properties in the image +- `Fluorescence` + - Average fluorescence intensity +- `H###`, `S##`, `V##` + - Frequency of pixels with specific hue (###: 0-359), saturation (##: 0-99), and intensity (##: 0-99) values +- `F##` + - Frequency of pixels with a specific fluorescence value (##: 0-99) +- `View` - TOP FRAME: Ignore this row - TOP AVG: Data from the top view - Side{Bottom, Small, Top, Full} FRAME 0 to 11: Data from various side view angles (0, 30, ..., 330 degrees)