From 79536e178d3cbd3612770b1fb8bb47dd129d8ec8 Mon Sep 17 00:00:00 2001 From: "Oh, Sungchan" Date: Fri, 28 Jun 2024 12:03:25 -0400 Subject: [PATCH] Update DataGuide_AAPF_RGB.md --- DataGuide_AAPF_RGB.md | 21 ++++++++++++++++++--- 1 file changed, 18 insertions(+), 3 deletions(-) diff --git a/DataGuide_AAPF_RGB.md b/DataGuide_AAPF_RGB.md index 10ea5cf..078e1d2 100644 --- a/DataGuide_AAPF_RGB.md +++ b/DataGuide_AAPF_RGB.md @@ -1,11 +1,20 @@ # DataGuide-AAPF-RGB -This document details the file system organization and navigation procedures for accessing both unprocessed RGB image data and the derived phenotypic measurements of the plants captured by the [Ag Alumni Seed Phenotyping Facility (AAPF)](https://ag.purdue.edu/aapf/). +This document details the file system organization and navigation procedures for accessing both unprocessed RGB image data and the derived phenotypic measurements of the plants captured by the [Ag Alumni Seed Phenotyping Facility (AAPF)](https://ag.purdue.edu/aapf/). The data can be categorized into two main parts: - `Raw Measurement Data`: This folder structure houses individual spreadsheets (.csv) and corresponding images (.png) for each measured phenotype. - `Masterfile (.xlsx)`: This file contains a compilation of spreadsheets and a guide document explaining the data contents. +### Table of Contents +- File System Structure +- Filename Conventions +- Image Products (example, resized) +How to Read Image Files Containing Morphological Measurement Info (image with MES in the filename) + + +___ + ### File System Structure Example (does not contain all associated files): @@ -90,9 +99,15 @@ These image files visually represent morphological measurements on the vegetatio - `Cyan (point)`: Center of mass coordinate -### How to Read Information in spreadsheet files (.xlsx for masterfile or csv file for individual measurements) +### How to Read Information in Masterfile (.xlsx for masterfile or csv for individual measurements) + +Phenotypic measurements derived from RGB images and auxiliary data are stored in spreadsheets. The master data file (*.xlsx) is organized into three sections: + +- `Top`: This section contains phenotypic measurements acquired from a top-down view of the plants. +- `Side_average`: This section provides the average phenotypic measurements calculated from data captured at various side-view angles (0°, 30°, 60°, ..., 330°). +- `Side_all`: This section contains detailed phenotypic measurements for each individual side-view angle (0°, 30°, 60°, ..., 330°). -The spreadsheets contains various phenotypic measurements derived from the RGB images and auxiliary measurement info. Here's a breakdown of the column headers: +Both the master data file (.xlsx) and individual measurement files (.csv) share a common data headers. A detailed explanation of the column headers follows: | Column Head | Description |