diff --git a/DataGuide_AAPF_HSI.md b/DataGuide_AAPF_HSI.md index 291d6c4..6229a4a 100644 --- a/DataGuide_AAPF_HSI.md +++ b/DataGuide_AAPF_HSI.md @@ -64,37 +64,34 @@ This document details the file system organization and navigation procedures for ### How to Read Information in Header Summary (header_summary_plants.csv, header_summary_ref.csv) -| Column Head | Description | -|----------------------|-------------------------------------------------------| -| `header path` | File path to the header file | -| `camera model` | Camera mode | -| `serial number` | Serial number of the camera | -| `roi left` | Camera- and height-specific parameter, not relevant to vegetation segments | -| `roi top` | Camera- and height-specific parameter, not relevant to vegetation segments | -| `roi width` | Camera- and height-specific parameter, not relevant to vegetation segments | -| `roi height` | Camera- and height-specific parameter, not relevant to vegetation segments | -| `samples` | Width of data cube (conveyer belt direction) | -| `bands` | Number of spectral channels | -| `lines` | Number of scanslines from top to bottom | -| `scanStartTime` | Scan start time | -| `scanEndTime` | Scan end time | -| `Wavelength` | List of central wavelengths for each channel (separated by "\|") | -| `fwhm` | Full wavelength at half maximum (width of wavelengths, separated by "\|" | -| `PlantID` | Plant ID (POT_BARCODE) | -| `CarrierID` || -| `PlantHeight`|| -| `PlantWidth`|| -| `LotID`|| -| `CameraPosition`|| -| `illumination`|| -| `scandir` || -| `scan_order`|| -| `dark white`|| - - - - - +The definition of column headers and corresponding values mostly originates from the sensor vendor and system integrator. + +| Column Head | Description | +|----------------------|-------------------------------------------------------------------------------------------------| +| `header path` | File path to the header file | +| `camera model` | Camera mode | +| `serial number` | Serial number of the camera | +| `roi left` | Camera- and height-specific parameter, not relevant to vegetation segments | +| `roi top` | Camera- and height-specific parameter, not relevant to vegetation segments | +| `roi width` | Camera- and height-specific parameter, not relevant to vegetation segments | +| `roi height` | Camera- and height-specific parameter, not relevant to vegetation segments | +| `samples` | Width of data cube (conveyer belt direction) | +| `bands` | Number of spectral channels | +| `lines` | Number of scanslines from top to bottom | +| `scanStartTime` | Scan start time | +| `scanEndTime` | Scan end time | +| `Wavelength` | List of central wavelengths for each channel (separated by "\|") | +| `fwhm` | Full wavelength at half maximum (width of wavelengths, separated by "\|" | +| `PlantID` | Plant ID (POT_BARCODE) | +| `CarrierID` | System-generated carrier ID | +| `PlantHeight` | Plnat height (❗ calculation method unclear) | +| `PlantWidth` | Plant width (❗ calculation method unclear) | +| `LotID` | Experiment ID | +| `CameraPosition` | The value in this column is set to "Both" when data from the corresponding opposing viewpoint (top for side views, side for top view) is also available. (Verification pending) | +| `illumination` | "4" under normal illumination conditions (no malfunction) | +| `specdir` | Spectral range of the camera and viewing direction (VNIR-SIDE, VNIR-TOP, SWIR-SIDE, or SWIR-TOP)| +| `scan_order` | The 'Scan order' column assigns a unique integer value to each scan incrementally based on the order of image capture during the experiment within the AAPF. This value is identical for all cameras (VNIR-SIDE, VNIR-TOP, SWIR-SIDE, and SWIR-TOP) operating concurrently during a single scanning session, which captures data for the same plant on the same day | +| `dark white` | "Dark" or "White", only available for `header_summary_ref.csv` | ### How to Read Animated GIF Files Containing VNIR-SWIR Coregistration Quality Info