From 90cc95ffea8c1185f47840bb660828bd4fafb556 Mon Sep 17 00:00:00 2001 From: "Oh, Sungchan" Date: Thu, 27 Jun 2024 16:44:30 -0400 Subject: [PATCH] Update DataGuide_AAPF_HSI.md --- DataGuide_AAPF_HSI.md | 40 ++++++++++++++++++++-------------------- 1 file changed, 20 insertions(+), 20 deletions(-) diff --git a/DataGuide_AAPF_HSI.md b/DataGuide_AAPF_HSI.md index afbf5f7..6d33a4d 100644 --- a/DataGuide_AAPF_HSI.md +++ b/DataGuide_AAPF_HSI.md @@ -17,24 +17,38 @@ This document details the file system organization and navigation procedures for #### Interim Data Product +The interim data product consists of three primary components: +- Masterfile (`Hyperspectral_data_AAPF_experiment_{Experiment_No}.xlsx`): This file stores the derived phenotypic measurements of the plants and a guide document. +- HSI Data Processing Quality Control Data (`quality_control`): This directory contains information for quality assessment of the HSI data processing pipeline. It includes summaries of header information for plants, white and dark reference, a detailed record of the processing procedures employed, and animated gif files used to check coregistration quality between visible and near infrared (VNIR) and shortwave infrared (SWIR) data. +- Compressed Vegetation Index Images (`{Vegetation_Index_Type}_{ROI filter}.zip`: This section houses compressed image files for various types of vegetation indices calculated from the HSI data (ROI: region of interest). - Parent directory - {Experiment_Number} - Example: 401 -- Subdirectories (HSI data processing quality control data) +- HSI data processing quality control data - {Parent_directory}/{quality_control} - Example: 401/quality_control -- Subdirectories (compressed vegetation index images) +- Compressed vegetation index images - {Parent_directory}/VI_images - Example: 401/VI_images + Example (does not contain all associated files): + 401 + ├── Hyperspectral_data_AAPF_experiment_401.xlsx (masterfile) + ├── quality_control + │   ├── header_summary_plants.csv + │   ├── header_summary_ref.csv + │   ├── HSI_R_2401761_240514080207482_VNIR-SIDE-DAT_401_20-1_240514080219626.gif + │   ├── HSI_R_2401761_240514080207482_VNIR-TOP-DAT_401_20-1_24051408022152.gif + │   ├── HSI_R_2401761_24061408172718_VNIR-SIDE-DAT_401_20-1_240614081746352.gif + └── VI_images + ├── NDVI_default.zip + ├── NDWI_default.zip + ├── NLI_default.zip + └── NMDI_default.zip -The interim data product consists of three primary components: -- Masterfile (`Hyperspectral_data_AAPF_experiment_{Experiment_No}.xlsx`): This file stores the derived phenotypic measurements of the plants and a guide document. -- HSI Data Processing Quality Control Data (`quality_control`): This directory contains information for quality assessment of the HSI data processing pipeline. It includes summaries of header information for plants, white and dark reference, a detailed record of the processing procedures employed, and animated gif files used to check coregistration quality between visible and near infrared (VNIR) and shortwave infrared (SWIR) data. -- Compressed Vegetation Index Images (`{Vegetation_Index_Type}_{ROI filter}.zip`: This section houses compressed image files for various types of vegetation indices calculated from the HSI data (ROI: region of interest). @@ -55,20 +69,6 @@ The interim data product consists of three primary components: - - Example (does not contain all associated files): - 401 - ├── Hyperspectral_data_AAPF_experiment_401.xlsx (masterfile) - ├── quality_control - │   ├── header_summary_plants.csv - │   ├── header_summary_ref.csv - │   ├── HSI_R_2401761_240514080207482_VNIR-SIDE-DAT_401_20-1_240514080219626.gif - │   ├── HSI_R_2401761_240514080207482_VNIR-TOP-DAT_401_20-1_24051408022152.gif - │   ├── HSI_R_2401761_24061408172718_VNIR-SIDE-DAT_401_20-1_240614081746352.gif - └── VI_images - ├── NDVI_default.zip - ├── NDWI_default.zip - ├── NLI_default.zip - └── NMDI_default.zip