diff --git a/DataGuide_AAPF_HSI.md b/DataGuide_AAPF_HSI.md index 66bc6e5..ffd4c15 100644 --- a/DataGuide_AAPF_HSI.md +++ b/DataGuide_AAPF_HSI.md @@ -2,9 +2,9 @@ This document details the file system organization and navigation procedures for accessing both unprocessed hyperspectral imaging (HSI) data and the derived phenotypic measurements of the plants captured by the [Ag Alumni Seed Phenotyping Facility (AAPF)](https://ag.purdue.edu/aapf/). -- Raw Scanned Data: This folder structure houses individual scans (.hdr, .md5, .raw, .tiff) for each measurement. -- Interim Data Product: This data contains data used for quality control procedures and images representing various vegetation indices. -- Masterfile (.xlsx): This file contains a compilation of spreadsheets and a guide document explaining the data contents. +- `Raw Scanned Data`: This folder structure houses individual scans (.hdr, .md5, .raw, .tiff) for each measurement. +- `Interim Data Product`: This data contains data used for quality control procedures and images representing various vegetation indices. +- `Masterfile (.xlsx)`: This file contains a compilation of spreadsheets and a guide document explaining the data contents. ### File system structure @@ -13,14 +13,14 @@ This document details the file system organization and navigation procedures for Directories are named using a convention that incorporates both experiment number and treatment. - - Example: 407_WL, 407_WW, 401_20-1, 401_20-2, 401_80. +- Example: 407_WL, 407_WW, 401_20-1, 401_20-2, 401_80. #### Interim Data Product The interim data product consists of three primary components: - - Masterfile (`Hyperspectral_data_AAPF_experiment_{Experiment_No}.xlsx`): This file stores the derived phenotypic measurements of the plants and a guide document. - - HSI Data Processing Quality Control Data (`quality_control`): This directory contains information for quality assessment of the HSI data processing pipeline. It includes summaries of header information for plants, white and dark reference, a detailed record of the processing procedures employed, and animated gif files used to check coregistration quality between visible and near infrared (VNIR) and shortwave infrared (SWIR) data. - - Compressed Vegetation Index Images (`{Vegetation_Index_Type}_{ROI filter}.zip`: This section houses compressed image files for various types of vegetation indices calculated from the HSI data (ROI: region of interest). +- Masterfile (`Hyperspectral_data_AAPF_experiment_{Experiment_No}.xlsx`): This file stores the derived phenotypic measurements of the plants and a guide document. +- HSI Data Processing Quality Control Data (`quality_control`): This directory contains information for quality assessment of the HSI data processing pipeline. It includes summaries of header information for plants, white and dark reference, a detailed record of the processing procedures employed, and animated gif files used to check coregistration quality between visible and near infrared (VNIR) and shortwave infrared (SWIR) data. +- Compressed Vegetation Index Images (`{Vegetation_Index_Type}_{ROI filter}.zip`: This section houses compressed image files for various types of vegetation indices calculated from the HSI data (ROI: region of interest).