diff --git a/DataGuide_AAPF_RGB.md b/DataGuide_AAPF_RGB.md index c7e82fe..e414365 100644 --- a/DataGuide_AAPF_RGB.md +++ b/DataGuide_AAPF_RGB.md @@ -95,22 +95,19 @@ These image files visually represent morphological measurements on the vegetatio The spreadsheets contains various phenotypic measurements derived from the RGB images and auxiliary measurement info. Here's a breakdown of the column headers: -| Column Head | Description | -|-------------------|-------------------------------------------------------------------------------------------------| -| `frame_nr` | Frame number from 0-11 for side view data | -| `Angle` | Side view angle where the vegetation is most dispersed | -| `Width`, `Height` | Dimensions of the smallest enclosing rectangle of the vegetation segments | -| `Surface` | Area of the vegetation within the pixel-wise boundary of vegetation segments | -| `Convex hull` | Area of the convex hull measured by the smallest enclosing polygon of the vegetation segments | -| `Roundedness` | Roundness of the red polygon (❗ calculation method unclear) | - - - -| `Center_of_mass_distance` | ❗ Unclear meaning | -| `Center_of_mass_x`, `Center_of_mass_y` | Coordinates of the center of mass point | -| `Hue, Saturation`, `Intensity` | Average values for these color properties in the image | -| `Fluorescence` | Average fluorescence intensity | -| `H###`, `S##`, `V##` | Frequency of pixels with specific hue (###: 0-359), saturation (##: 0-99), and value (##: 0-99)
Check the definitions of hue, saturation, and value in [this link](https://changingminds.org/explanations/perception/visual/hsl.htm) | -| `F##` | Frequency of pixels with a specific fluorescence value (##: 0-99) | -| `View`| TOP FRAME: Ignore this row
TOP AVG: Data from the top view
Side{Bottom, Small, Top, Full} FRAME 0 to 11: Data from various side view angles (0, 30, ..., 330 degrees)
Side{Bottom, Small, Top, Full} AVG: Average of Side view FRAME data | +| Column Head | Description | +|----------------------------------------|-------------------------------------------------------------------------------------------------| +| `frame_nr` | Frame number from 0-11 for side view data | +| `Angle` | Side view angle where the vegetation is most dispersed | +| `Width`, `Height` | Dimensions of the smallest enclosing rectangle of the vegetation segments | +| `Surface` | Area of the vegetation within the pixel-wise boundary of vegetation segments | +| `Convex hull` | Area of the convex hull measured by the smallest enclosing polygon of the vegetation segments | +| `Roundedness` | Roundness of the pixel-wise boundary of vegetation segments (❗ calculation method unclear) | +| `Center_of_mass_distance` | ❗ Unclear meaning | +| `Center_of_mass_x`, `Center_of_mass_y` | Coordinates of the center of mass point | +| `Hue, Saturation`, `Intensity` | Average values for these color properties in the image | +| `Fluorescence` | Average fluorescence within the pixel-wise boundary of vegetation segments | +| `H###`, `S##`, `V##` | Frequency of pixels with specific hue (###: 0-359), saturation (##: 0-99), and value (##: 0-99)
Check the definitions of hue, saturation, and value in [this link](https://changingminds.org/explanations/perception/visual/hsl.htm) | +| `F##` | Frequency of pixels with a specific fluorescence value (##: 0-99) | +| `View` | TOP FRAME: Ignore this row
TOP AVG: Data from the top view
Side{Bottom, Small, Top, Full} FRAME 0 to 11: Data from various side view angles (0, 30, ..., 330 degrees)
Side{Bottom, Small, Top, Full} AVG: Average of Side view FRAME data |