From cb32fdffe9d1960d7e80edbd5e569c27d5fa6b1b Mon Sep 17 00:00:00 2001 From: "Oh, Sungchan" Date: Thu, 27 Jun 2024 20:35:06 -0400 Subject: [PATCH] Update DataGuide_AAPF_HSI.md --- DataGuide_AAPF_HSI.md | 45 +++++++++++++++---------------------------- 1 file changed, 16 insertions(+), 29 deletions(-) diff --git a/DataGuide_AAPF_HSI.md b/DataGuide_AAPF_HSI.md index 7e7ff82..1a3bd43 100644 --- a/DataGuide_AAPF_HSI.md +++ b/DataGuide_AAPF_HSI.md @@ -78,35 +78,22 @@ This document details the file system organization and navigation procedures for The spreadsheets contains various phenotypic measurements derived from the HSI data and auxiliary measurement info. Here's a breakdown of the column headers: -- `Filename-VNIR-SIDE` - - Filename of input VNIR-SIDE data -- `Filename-VNIR-TOP` - - Filename of input VNIR-TOP data -- `Filename-SWIR-SIDE` - - Filename of input SWIR-SIDE data -- `Filename-SWIR-TOP` - - Filename of input SWIR-TOP data -- `EXP ID` - - Internal experiment number assigned in PPEW -- `POT_BARCODE` - - Unique number assigned to plant -- `VARIETY` - - Variety assigned in PPEW -- `TREATMENT` - - Treatment applied to plant -- `SCAN_TIME` - - Scan start time -- `SCAN_DATE` - - Scan start date -- `DFP` - - Age of plant in days from planting at time of imaging -- `{vegetation index}_{statistic} (e.g., NDVI_avg)` - - Vegetation index (VI) statistics within masked vegetation areas - - [List of vegetation indices used](/resources/VI.md) - - List of statistics used - - avg: average, sd: standard deviation, max: maximum, min: minimum, p##: ##-th percentile) -- `Wavelength in nm (e.g., 402.8)` - - Average reflectance over vegetation mask area (ratio of reflected energy to incident energy) + +| Column Head | Description | +|----------------------|-------------------------------------------------------| +| `Filename-VNIR-SIDE` | Filename of input VNIR-SIDE data | +| `Filename-VNIR-TOP` | Filename of input VNIR-TOP data | +| `Filename-SWIR-SIDE` | Filename of input SWIR-SIDE data | +| `Filename-SWIR-TOP` | Filename of input SWIR-TOP data | +| `EXP ID` | Internal experiment number assigned in PPEW | +| `POT_BARCODE` | Unique number assigned to plant | +| `VARIETY` | Variety assigned in PPEW | +| `TREATMENT` | Treatment applied to plant | +| `SCAN_TIME` | Scan start time | +| `SCAN_DATE` | Scan start date | +| `DFP` | Age of plant in days from planting at time of imaging | +| `{vegetation index}_{statistic}
(e.g., NDVI_avg)`| Vegetation index (VI) statistics within masked vegetation areas
[List of vegetation indices used](/resources/VI.md)
List of statistics used (avg: average, sd: standard deviation, max: maximum, min: minimum, p##: ##-th percentile) +| `Wavelength in nm
(e.g., 402.8)`| Average reflectance over vegetation mask area (ratio of reflected energy to incident energy) |