From cd6fcfbe4414e8517f1f34b9729ecbef417d2e52 Mon Sep 17 00:00:00 2001 From: "Oh, Sungchan" Date: Wed, 31 Jul 2024 10:05:25 -0400 Subject: [PATCH] Update README.md --- README.md | 16 +++++++++------- 1 file changed, 9 insertions(+), 7 deletions(-) diff --git a/README.md b/README.md index dcfe29c..f2f313c 100644 --- a/README.md +++ b/README.md @@ -1,19 +1,21 @@ # DataExploration-AAPF - -This GitHub repository offers a comprehensive guide to RGB and HSI data generated at the [Ag Alumni Seed Phenotyping Facility (AAPF)](https://ag.purdue.edu/aapf/). Additionally, it includes foundational [R](https://www.r-project.org/) tools for transforming AAPF data products (RGB, hyperspectral, X-RAY) into an analysis-ready ([long format table](http://www.cookbook-r.com/Manipulating_data/Converting_data_between_wide_and_long_format/)) dataset. This standardized dataset can be directly used in statistical modeling and visualization using R. +This GitHub repository provides a comprehensive resource for analyzing high-throughput phenotyping (HTP) data from the [Ag Alumni Seed Phenotyping Facility (AAPF, Purdue)](https://ag.purdue.edu/aapf/), including a detailed guide and a collection of data processing tools. It includes foundational [R](https://www.r-project.org/) tools for transforming AAPF data products (RGB, hyperspectral, X-ray) into an analysis-ready dataset ([long format table](http://www.cookbook-r.com/Manipulating_data/Converting_data_between_wide_and_long_format/)). This standardized dataset can be directly used in statistical modeling and visualization using R. ## AAPF Data Guide * [RGB imaging data (above-ground)](DataGuide_AAPF_RGB.md) * [Hyperspectral imaging (HSI) data (above-ground)](DataGuide_AAPF_HSI.md) -* X-RAY computed tomography (CT) imaging data (below-ground, root system) (under construction 🚧) +* X-ray computed tomography (CT) imaging data (below-ground, root system) (under construction 🚧) ## Available Tools -* [Reshape data product (masterfile, .xlsx) into analysis-ready format] - - [reshape_rgb_hsi.r](reshape_rgb_hsi.r) - - [reshape_xray.r](reshape_xray.r) -* wef +* Reshape data product (masterfile, .xlsx) into analysis-ready format + - [RGB and HSI data](reshape_rgb_hsi.r) + - [X-ray data](reshape_xray.r) +* Repeatability (The consistency of repeated measurements) evaluation + - [calculate_repeatability.r](calculate_repeatability.r) +* Visualization + - [Overall comparison of repeatability measurements from different imaging sensors and camera locations](display.repeatability.r)