From cfefedb96ad82c94b1300089d251cd226994bd5d Mon Sep 17 00:00:00 2001 From: "Oh, Sungchan" Date: Thu, 27 Jun 2024 17:49:20 -0400 Subject: [PATCH] Update DataGuide_AAPF_HSI.md --- DataGuide_AAPF_HSI.md | 33 +++++++++++++++++++++++++++++++++ 1 file changed, 33 insertions(+) diff --git a/DataGuide_AAPF_HSI.md b/DataGuide_AAPF_HSI.md index e75f479..21be4b0 100644 --- a/DataGuide_AAPF_HSI.md +++ b/DataGuide_AAPF_HSI.md @@ -76,6 +76,39 @@ This document details the file system organization and navigation procedures for ### How to Read Information in Spreadsheet file (.xlsx, masterfile) +The spreadsheets contains various phenotypic measurements derived from the HSI data and auxiliary measurement info. Here's a breakdown of the column headers: + +- `Filename-VNIR-SIDE` + - Filename of input VNIR-SIDE data +- `Filename-VNIR-TOP` + - Filename of input VNIR-TOP data +- `Filename-SWIR-SIDE` + - Filename of input SWIR-SIDE data +- `Filename-SWIR-TOP` + - Filename of input SWIR-TOP data +- `EXP ID` + - Internal experiment number assigned in PPEW +- `POT_BARCODE` + - Unique number assigned to plant +- `VARIETY` + - Variety assigned in PPEW +- `TREATMENT` + - Treatment applied to plant +- `SCAN_TIME` + - Scan start time +- `SCAN_DATE` + - Scan start date +- `DFP` + - Age of plant in days from planting at time of imaging +- `{vegetation index}_{statistic}` + - Statistics of vegetation indices over vegetation mask area. See below for more detail. +- `Wavelength in nm` + - Average reflectance over vegetation mask area (ratio of reflected energy to incident energy) + + + + +