diff --git a/.gitignore b/.gitignore index 82f9275..40345b9 100644 --- a/.gitignore +++ b/.gitignore @@ -3,160 +3,9 @@ __pycache__/ *.py[cod] *$py.class -# C extensions -*.so - -# Distribution / packaging -.Python -build/ -develop-eggs/ -dist/ -downloads/ -eggs/ -.eggs/ -lib/ -lib64/ -parts/ -sdist/ -var/ -wheels/ -share/python-wheels/ -*.egg-info/ -.installed.cfg -*.egg -MANIFEST - -# PyInstaller -# Usually these files are written by a python script from a template -# before PyInstaller builds the exe, so as to inject date/other infos into it. -*.manifest -*.spec - -# Installer logs -pip-log.txt -pip-delete-this-directory.txt - -# Unit test / coverage reports -htmlcov/ -.tox/ -.nox/ -.coverage -.coverage.* -.cache -nosetests.xml -coverage.xml -*.cover -*.py,cover -.hypothesis/ -.pytest_cache/ -cover/ - -# Translations -*.mo -*.pot - -# Django stuff: -*.log -local_settings.py -db.sqlite3 -db.sqlite3-journal - -# Flask stuff: -instance/ -.webassets-cache - -# Scrapy stuff: -.scrapy - -# Sphinx documentation -docs/_build/ - -# PyBuilder -.pybuilder/ -target/ - # Jupyter Notebook .ipynb_checkpoints # IPython profile_default/ ipython_config.py - -# pyenv -# For a library or package, you might want to ignore these files since the code is -# intended to run in multiple environments; otherwise, check them in: -# .python-version - -# pipenv -# According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control. -# However, in case of collaboration, if having platform-specific dependencies or dependencies -# having no cross-platform support, pipenv may install dependencies that don't work, or not -# install all needed dependencies. -#Pipfile.lock - -# poetry -# Similar to Pipfile.lock, it is generally recommended to include poetry.lock in version control. -# This is especially recommended for binary packages to ensure reproducibility, and is more -# commonly ignored for libraries. -# https://python-poetry.org/docs/basic-usage/#commit-your-poetrylock-file-to-version-control -#poetry.lock - -# pdm -# Similar to Pipfile.lock, it is generally recommended to include pdm.lock in version control. -#pdm.lock -# pdm stores project-wide configurations in .pdm.toml, but it is recommended to not include it -# in version control. -# https://pdm.fming.dev/latest/usage/project/#working-with-version-control -.pdm.toml -.pdm-python -.pdm-build/ - -# PEP 582; used by e.g. github.com/David-OConnor/pyflow and github.com/pdm-project/pdm -__pypackages__/ - -# Celery stuff -celerybeat-schedule -celerybeat.pid - -# SageMath parsed files -*.sage.py - -# Environments -.env -.venv -env/ -venv/ -ENV/ -env.bak/ -venv.bak/ - -# Spyder project settings -.spyderproject -.spyproject - -# Rope project settings -.ropeproject - -# mkdocs documentation -/site - -# mypy -.mypy_cache/ -.dmypy.json -dmypy.json - -# Pyre type checker -.pyre/ - -# pytype static type analyzer -.pytype/ - -# Cython debug symbols -cython_debug/ - -# PyCharm -# JetBrains specific template is maintained in a separate JetBrains.gitignore that can -# be found at https://github.com/github/gitignore/blob/main/Global/JetBrains.gitignore -# and can be added to the global gitignore or merged into this file. For a more nuclear -# option (not recommended) you can uncomment the following to ignore the entire idea folder. -#.idea/ diff --git a/DigitalAssays/DigitalAnalysis.ipynb b/DigitalAssays/DigitalAnalysis.ipynb index 507fcf9..22c0935 100644 --- a/DigitalAssays/DigitalAnalysis.ipynb +++ b/DigitalAssays/DigitalAnalysis.ipynb @@ -9,7 +9,7 @@ "This folder is meant to serve as an example of how to call and interact with the `DigitalAssayAnalysis` module. \n", "\n", "## License\n", - "Copyright (C) 2024 Purdue Research Foundation. This work is protected under GNU Affero General Public License Version 3 with Commons Clause. Please see the `LICENSE` file for more information." + "Copyright (C) 2025 Purdue Research Foundation. This work is protected under GNU Affero General Public License Version 3 with Commons Clause. Please see the `LICENSE` file for more information." ] }, { diff --git a/DigitalAssays/DigitalAssayAnalysis.py b/DigitalAssays/DigitalAssayAnalysis.py index c189c3b..cf4fe19 100644 --- a/DigitalAssays/DigitalAssayAnalysis.py +++ b/DigitalAssays/DigitalAssayAnalysis.py @@ -7,7 +7,7 @@ __email__ = 'msverma@purdue.edu' __version__ = '1.0.0' __status__ = 'Development' -__copyright__ = "Copyright (C) 2024 Purdue Research Foundation" +__copyright__ = "Copyright (C) 2025 Purdue Research Foundation" __license__ = "GNU Affero General Public License Version 3 with Commons Clause" #### BEGIN IMPORTS diff --git a/DigitalAssays/README.md b/DigitalAssays/README.md index b9303f4..1af5866 100644 --- a/DigitalAssays/README.md +++ b/DigitalAssays/README.md @@ -93,4 +93,4 @@ $C_{avg, 95\\%} = \left( \frac{C_{avg, sample} - t_{crit}\cdot\sigma (C)}{\sqrt{ Averages for copies per reaction are calcualted the same way, except replacing $C_{cps/\mu L}$ with $C_{cps/rxn}$. -
© 2024 - Purdue Research Foundation. Reaction Analysis Library Documentation by Josiah Davidson is licensed under CC BY-NC 4.0
© 2025 - Purdue Research Foundation. Reaction Analysis Library Documentation by Josiah Davidson is licensed under CC BY-NC 4.0
© 2024 - Purdue Research Foundation. Primer Analysis Documentation by Josiah Davidson is licensed under CC BY-NC 4.0
© 2025 - Purdue Research Foundation. Primer Analysis Documentation by Josiah Davidson is licensed under CC BY-NC 4.0