DEPENDENCIES
Below is the list for softwares:
PLINK, EIGENSTRAT, vim, git, tabix, bcftools, sed, gawk, perl, ParaFly
Below is the list for R packages:
DESeq2, GenomicRanges, preprocessCore, dplyr, plyr, Rgb, ggplot2, rtracklayer, data.table, dataPreparation, parcor, MASS, matrixcalc, chron, igraph, dnet, visNetwork, STRINGdb, TFutils, shiny, shinyfullscreen, shinycustomloader, shinydashboard, plotly, DT, circlize
Below is the list for python packages:
pandas, numpy, scipy, argparse, feather, statsmodels