diff --git a/script/adj/adj_filter.sh b/script/adj/adj_filter.sh index b0e8b39..7d44605 100755 --- a/script/adj/adj_filter.sh +++ b/script/adj/adj_filter.sh @@ -4,7 +4,7 @@ ncore=$($SIGNET_ROOT/signet -s --ncore_local) cd $SIGNET_TMP_ROOT/tmpg -echo -e "Splitting genotype data ... \n" +echo -e "Splitting genotype data into chromosome-wise... \n" $SIGNET_SCRIPT_ROOT/geno_prep/splitchr.pl matched.Geno.data impute/impute_Genotype.sizes $nchr @@ -46,5 +46,5 @@ $SIGNET_SCRIPT_ROOT/adj/extractsnp.pl snps5.idx matched.Geno.data > ${resa}_new ## Summarize minor allele frequency for SNPs in new.Geno output to new.Geno.maf echo $(wc -l < ${resa}_new.Geno) >> sz -echo -e "Summarizing minor allele frequencies ... \n" +echo -e "Summarizing minor allele frequencies...\n" Rscript $SIGNET_SCRIPT_ROOT/adj/masummary.R