From 02814340c30a4c8af160e7e8c521a050549f924c Mon Sep 17 00:00:00 2001 From: "Zhang, Dabao" Date: Fri, 20 May 2022 14:21:46 -0400 Subject: [PATCH] Update adj_filter.sh --- script/adj/adj_filter.sh | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/script/adj/adj_filter.sh b/script/adj/adj_filter.sh index b0e8b39..7d44605 100755 --- a/script/adj/adj_filter.sh +++ b/script/adj/adj_filter.sh @@ -4,7 +4,7 @@ ncore=$($SIGNET_ROOT/signet -s --ncore_local) cd $SIGNET_TMP_ROOT/tmpg -echo -e "Splitting genotype data ... \n" +echo -e "Splitting genotype data into chromosome-wise... \n" $SIGNET_SCRIPT_ROOT/geno_prep/splitchr.pl matched.Geno.data impute/impute_Genotype.sizes $nchr @@ -46,5 +46,5 @@ $SIGNET_SCRIPT_ROOT/adj/extractsnp.pl snps5.idx matched.Geno.data > ${resa}_new ## Summarize minor allele frequency for SNPs in new.Geno output to new.Geno.maf echo $(wc -l < ${resa}_new.Geno) >> sz -echo -e "Summarizing minor allele frequencies ... \n" +echo -e "Summarizing minor allele frequencies...\n" Rscript $SIGNET_SCRIPT_ROOT/adj/masummary.R