From 08fc0146329241413ab1508b9dd0b7f0837a2adc Mon Sep 17 00:00:00 2001 From: "Zhang, Dabao" Date: Fri, 20 May 2022 13:44:19 -0400 Subject: [PATCH] Update gexp_prep.R --- script/gexp_prep/gexp_prep.R | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/script/gexp_prep/gexp_prep.R b/script/gexp_prep/gexp_prep.R index 53c47dc..6e9483d 100644 --- a/script/gexp_prep/gexp_prep.R +++ b/script/gexp_prep/gexp_prep.R @@ -10,7 +10,7 @@ mcounts=fread(file) ##remove last 5 rows mcounts=head(mcounts, -5) -cat(paste0("Preprocessing file: ", file, "\n")) +cat(paste0("Preprocessing gene expression file: ", file, "\n")) geneinfo=mcounts[,1] @@ -28,7 +28,7 @@ mcounts <- mcounts[, -lowcount.id] } cat(paste0("Removed ", length(lowcount.id), " samples with total counts < 2.5 M\n")) -cat("Applying variance stabalizing transformation\n") +cat("Applying variance stabalizing transformation...\n") sampleinfo <- matrix(factor(1),nrow=ncol(mcounts)) rownames(sampleinfo) <- colnames(mcounts)