diff --git a/DEPENDENCY.md b/DEPENDENCY.md
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+DEPENDENCIES
+
+### Below is the list for softwares:
+PLINK, EIGENSTRAT, vim, git, tabix, bcftools, sed, gawk, perl, ParaFly
+
+
+
+### Below is the list for R packages:
+DESeq2, GenomicRanges, preprocessCore, dplyr, plyr, Rgb, ggplot2, rtracklayer,
+data.table, dataPreparation, parcor, MASS, matrixcalc, chron, igraph, dnet,
+visNetwork, STRINGdb, TFutils, shiny, shinyfullscreen, shinycustomloader, 
+shinydashboard, plotly, DT, circlize
+
+
+### Below is the list for  python packages:
+pandas, numpy, scipy, argparse, feather, statsmodels
diff --git a/DEPENDENCY.txt b/DEPENDENCY.txt
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-DEPENDENCIES
-
-### Below is a list of softwares
-sed, awk, perl, ParaFly
-
-
-
-Here is a list of of R dependencies:
-
-
-
-### Below is a list of R packages:
-data.table, dataPreparation, parcor, MASS, matrixcalc, chron, igraph, dnet,
-visNetwork, STRINGdb, TFutils, shiny, shinyfullscreen, shinycustomloader, 
-shinydashboard, plotly, DT, circlize