diff --git a/script/cis-eQTL/common.ciseQTL.sh b/script/cis-eQTL/common.ciseQTL.sh index 349eb02..13e28c2 100755 --- a/script/cis-eQTL/common.ciseQTL.sh +++ b/script/cis-eQTL/common.ciseQTL.sh @@ -1,11 +1,11 @@ #!/bin/bash cd $SIGNET_TMP_ROOT/tmpc -echo -e "Cis-eQTL Analyis for common variants [alpha:"$alpha"]......\n" +echo -e "Mapping cis-eQTL with common variants [alpha:"$alpha"]...\n" Rscript $SIGNET_SCRIPT_ROOT/cis-eQTL/common.ciseQTL.r -echo -e "\nSummarizing the result for common variants \n" +echo -e "\nSummarizing the result for common variants...\n" ##select significant ones Rscript $SIGNET_SCRIPT_ROOT/cis-eQTL/sig.commoncis.r "alpha='$alpha'" @@ -17,5 +17,4 @@ wait nsig=$(awk '{print $2}' ${resc}_common.sig.pValue_${alpha} | sort | uniq | wc -l) ngene=$(awk '{print $1}' ${resc}_common.sig.pValue_${alpha} | sort | uniq | wc -l) -echo -e "----" $nsig "significant common variants found for "$ngene" genes\n" - +echo -e "----" $nsig "significant common variants found for "$ngene" genes!\n"