From 58d3307b4aa5072c95d99de1b3c431a41a16893f Mon Sep 17 00:00:00 2001 From: "Zhang, Dabao" Date: Fri, 20 May 2022 13:24:27 -0400 Subject: [PATCH] Update imputation.sh --- script/geno_prep/imputation.sh | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/script/geno_prep/imputation.sh b/script/geno_prep/imputation.sh index 479ad18..f1d52f7 100755 --- a/script/geno_prep/imputation.sh +++ b/script/geno_prep/imputation.sh @@ -36,7 +36,7 @@ done ##begin to impute echo -e "\n" -echo -e "Begin to impute the genotype data using impute2 \n" +echo -e "Imputing the genotype data with IMPUTE2... \n" for i in `seq 1 ${nchr}` @@ -84,7 +84,7 @@ done ## employ parallel computing for imputation time ParaFly -c impute_params.txt -CPU $ncores if [[ $(wc -l < impute_params.txt) -ne $(wc -l < impute_params.txt.completed) ]];then -echo -e "\nPlease note that some of the jobs are not finished !!! This could be a memeory allocation issue.\n" +echo -e "\nWarning: Some of the jobs are imcomplete! There could be a memeory allocation issue.\n" kill -10 $job_id fi