diff --git a/script/cis-eQTL/cis-eQTL.sh b/script/cis-eQTL/cis-eQTL.sh index e495a0b..20e5109 100755 --- a/script/cis-eQTL/cis-eQTL.sh +++ b/script/cis-eQTL/cis-eQTL.sh @@ -1,5 +1,5 @@ #!/bin/bash -echo -e "Splitting the SNPs by maf\n" +echo -e "Splitting the SNPs by MAF...\n" $SIGNET_SCRIPT_ROOT/cis-eQTL/snpsplit.sh && @@ -13,14 +13,14 @@ $SIGNET_SCRIPT_ROOT/cis-eQTL/rare.ciseQTL.sh && wait #Combine the results -echo -e "Begin to summarize the results\n" +echo -e "Summarizing the results...\n" $SIGNET_SCRIPT_ROOT/cis-eQTL/combine.sh && # #echo -e "\nBegin to find the uncorrelated SNPs and fit a ridge regression to genes that has more than one cis-eQTL region\n" -echo -e "\nCis-eQTL analysis completed!\n" -echo -e "Please copy the following files into research cluster for computing:\n" +echo -e "\nCis-eQTL mapping is completed!\n" +echo -e "Please copy the following files into research clusters for constructing GRN:\n" echo -e "1. ${resc}_all.sig.pValue_$alpha\n" echo -e "2. ${resc}_net.gexp.data\n"