diff --git a/script/cis-eQTL/cis-SNPs.sh b/script/cis-eQTL/cis-SNPs.sh index a5d19f3..3bc9c84 100755 --- a/script/cis-eQTL/cis-SNPs.sh +++ b/script/cis-eQTL/cis-SNPs.sh @@ -11,11 +11,11 @@ awk -f low.snps.idx < $geno 1>low.Geno.data 2>err_low & awk -f common.snps.idx < $geno 1>common.Geno.data 2>err_common & ### SNP position (chr#, SNP pos) -awk '{print $1,$4}' $snps_map > all.SNPpos -awk '{print $1,$4}' rare.Geno.map > rare.SNPpos -awk '{print $1,$4}' low.Geno.map > low.SNPpos -awk '{print $1,$4}' common.Geno.map > common.SNPpos +awk '{print $1,$4}' $snps_map > all.SNPpos & +awk '{print $1,$4}' rare.Geno.map > rare.SNPpos & +awk '{print $1,$4}' low.Geno.map > low.SNPpos & +awk '{print $1,$4}' common.Geno.map > common.SNPpos & -Rscript $SIGNET_SCRIPT_ROOT/cis-eQTL/rare.cispair.r "upstream='$upstream'" "downstream='$downstream'" -Rscript $SIGNET_SCRIPT_ROOT/cis-eQTL/common.cispair.r "upstream='$upstream'" "downstream='$downstream'" -Rscript $SIGNET_SCRIPT_ROOT/cis-eQTL/low.cispair.r "upstream='$upstream'" "downstream='$downstream'" +Rscript $SIGNET_SCRIPT_ROOT/cis-eQTL/rare.cispair.r "upstream='$upstream'" "downstream='$downstream'" & +Rscript $SIGNET_SCRIPT_ROOT/cis-eQTL/common.cispair.r "upstream='$upstream'" "downstream='$downstream'" & +Rscript $SIGNET_SCRIPT_ROOT/cis-eQTL/low.cispair.r "upstream='$upstream'" "downstream='$downstream'" &