From 92fc3e28f294ff74c75840e7f8cccd96c16310ec Mon Sep 17 00:00:00 2001 From: Zhongli Jiang Date: Sun, 1 May 2022 18:45:00 -0400 Subject: [PATCH] add wait command --- script/cis-eQTL/cis-SNPs.sh | 9 +++++---- 1 file changed, 5 insertions(+), 4 deletions(-) diff --git a/script/cis-eQTL/cis-SNPs.sh b/script/cis-eQTL/cis-SNPs.sh index 3bc9c84..71db4c6 100755 --- a/script/cis-eQTL/cis-SNPs.sh +++ b/script/cis-eQTL/cis-SNPs.sh @@ -11,11 +11,12 @@ awk -f low.snps.idx < $geno 1>low.Geno.data 2>err_low & awk -f common.snps.idx < $geno 1>common.Geno.data 2>err_common & ### SNP position (chr#, SNP pos) -awk '{print $1,$4}' $snps_map > all.SNPpos & -awk '{print $1,$4}' rare.Geno.map > rare.SNPpos & -awk '{print $1,$4}' low.Geno.map > low.SNPpos & -awk '{print $1,$4}' common.Geno.map > common.SNPpos & +awk '{print $1,$4}' $snps_map > all.SNPpos +awk '{print $1,$4}' rare.Geno.map > rare.SNPpos +awk '{print $1,$4}' low.Geno.map > low.SNPpos +awk '{print $1,$4}' common.Geno.map > common.SNPpos Rscript $SIGNET_SCRIPT_ROOT/cis-eQTL/rare.cispair.r "upstream='$upstream'" "downstream='$downstream'" & Rscript $SIGNET_SCRIPT_ROOT/cis-eQTL/common.cispair.r "upstream='$upstream'" "downstream='$downstream'" & Rscript $SIGNET_SCRIPT_ROOT/cis-eQTL/low.cispair.r "upstream='$upstream'" "downstream='$downstream'" & +wait