From b720fe5d80925147b8d3ca3c8dc92ab4c5206ebe Mon Sep 17 00:00:00 2001 From: "Zhang, Dabao" Date: Fri, 20 May 2022 14:16:31 -0400 Subject: [PATCH] Update adj.sh --- script/adj/adj.sh | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/script/adj/adj.sh b/script/adj/adj.sh index b5d87cb..0f54064 100755 --- a/script/adj/adj.sh +++ b/script/adj/adj.sh @@ -5,11 +5,11 @@ $SIGNET_SCRIPT_ROOT/adj/adj_filter.sh && $SIGNET_SCRIPT_ROOT/adj/adj_pca.sh && echo -e "\n" -echo -e "Please check the pca plots \n" +echo -e "You may want to check the PCA plots to determine the number of PCs for population stratification\n" ##pc=3 by default pc=3 -read -p "Enter the number of PC's you want to use: " pc -echo "The number of pc used will be $pc" +read -p "Enter the number of PCs for population structures: " pc +echo "The number of PCs to be used is $pc" echo -e "\n" Rscript $SIGNET_SCRIPT_ROOT/adj/adj_adjust.R "clifile='$clifile'" "npc='$pc'"