diff --git a/script/network_portal.sh b/script/network_portal.sh index 6c79212..631d32a 100755 --- a/script/network_portal.sh +++ b/script/network_portal.sh @@ -26,8 +26,8 @@ function usage() { echo ' signet -n [OPTION VAL] ...' echo -e "\n" echo 'Description:' - echo ' --net.gexp.data gene expression data for network analysis' - echo ' --net.geno.data marker data for network analysis' + echo ' --net.gexp.data gene expression data for GRN construction' + echo ' --net.geno.data marker data for GRN construction' echo ' --sig.pair significant index pairs for gene expression and markers' echo ' --net.genename gene name files for gene expression data' echo ' --net.genepos gene position files for gene expression data' @@ -42,7 +42,7 @@ function usage() { # echo " --filter To focus on a list of genes" echo " --resn result prefix" echo " --sif singularity container" - echo " --email send notification emails for both two stages if you have mail installed in Linux, and interactive=F" + echo " --email send notification emails after each stage is compeleted if you have mail installed in Linux, and interactive=F" exit -1 } [ $? -ne 0 ] && usage @@ -145,7 +145,7 @@ $SINGULARITY_COMMAND # check if in a singularity container if [[ $(which singularity) == "" ]];then -echo -e "The container couldn't be found. \nPlease don't invoke a container mannually as it's integrated in the analysis. +echo -e "Cannot find the container. \nPlease don't invoke a container mannually as it's integrated in the analysis. You could edit the path of the container using --sif argument." exit -1 fi