From d76aef4cf4316c9d7fdcb148db2c8c80438ab1df Mon Sep 17 00:00:00 2001 From: "Zhang, Dabao" Date: Fri, 20 May 2022 13:45:27 -0400 Subject: [PATCH] Update gexp_prep_back.R --- script/gexp_prep/gexp_prep_back.R | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/script/gexp_prep/gexp_prep_back.R b/script/gexp_prep/gexp_prep_back.R index f8edf91..d8ce579 100644 --- a/script/gexp_prep/gexp_prep_back.R +++ b/script/gexp_prep/gexp_prep_back.R @@ -6,7 +6,7 @@ suppressPackageStartupMessages(library(data.table)) mcounts=fread(file) -cat(paste0("Preprocessing file", file, "\n")) +cat(paste0("Preprocessing gene expression file:", file, "\n")) geneinfo=mcounts[,1] #fwrite(mcounts[,1],"gene_id") @@ -23,7 +23,7 @@ mcounts <- mcounts[, -lowcount.id] } cat(paste0("Removed ", length(lowcount.id), " samples with total counts < 2.5 M\n")) -cat("Applying variance stabalizing transformation\n") +cat("Applying variance stabalizing transformation...\n") sampleinfo <- matrix(factor(1),nrow=ncol(mcounts)) rownames(sampleinfo) <- colnames(mcounts)