From dbf819bff5641cb5611d371faf207df18c84de14 Mon Sep 17 00:00:00 2001
From: "Zhang, Dabao" <zhangdb@purdue.edu>
Date: Fri, 20 May 2022 17:00:29 -0400
Subject: [PATCH] Update plink.sh

---
 script/geno_prep/plink.sh | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/script/geno_prep/plink.sh b/script/geno_prep/plink.sh
index d659bf0..56705dd 100755
--- a/script/geno_prep/plink.sh
+++ b/script/geno_prep/plink.sh
@@ -6,4 +6,4 @@ plink --silent --noweb --ped $pedfile --map $mapfile --geno $geno --hwe $hwe --r
 plink --silent --noweb --file $SIGNET_TMP_ROOT/tmpg/clean_Genotype --mind $mind --exclude $SIGNET_TMP_ROOT/tmpg/clean_Genotype.dupvar --recode --out $SIGNET_TMP_ROOT/tmpg/clean_Genotype --set-hh-missing &&
 plink --silent --noweb --file $SIGNET_TMP_ROOT/tmpg/clean_Genotype --recodeA --out $SIGNET_TMP_ROOT/tmpg/clean_Genotype --set-hh-missing &&
 tail -n+2 $SIGNET_TMP_ROOT/tmpg/clean_Genotype.raw > $SIGNET_TMP_ROOT/tmpg/clean_Genotype.data  &&
-echo -e "Preprocessing genotype data... Completed!\n"
+echo -e "Preprocessing genotype data... completed!\n"