diff --git a/script/adj/adj_adjust_gtex.sh b/script/adj/adj_adjust_gtex.sh index 4c172cd..6cb0220 100755 --- a/script/adj/adj_adjust_gtex.sh +++ b/script/adj/adj_adjust_gtex.sh @@ -16,7 +16,7 @@ $SIGNET_SCRIPT_ROOT/adj/combine_covariates.py --genotype_pcs="empty.txt" \ empty.txt \ all_covs_withoutigtpc_${tissue}_no_peer && -echo -e 'Begin Preprocessing ...\n' +echo -e 'Adjusting gene expressions for covariate effects...\n' cd $SIGNET_TMP_ROOT/tmpa ## adjust expression by the covariates: top pcs, without PEER factors, Sex, Platform, Protocol $SIGNET_SCRIPT_ROOT/adj/gexp_cov_adjust.py --expr ${rest}_expression_normalized_igt2log_GTEx_${tissue}.expression.bed.gz \