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filenames | |
getwd | |
getwd(CovReg.Rmd) | |
getwd() | |
filedir <- getwd() | |
#main covid case data from jhu.edu | |
#download all csv in folder | |
setwd("/Users/nicholasgunady/Documents/covid-regression/Covid-Data") | |
dir <- "Covid-Data" | |
#main covid case data from jhu.edu | |
#download all csv in folder | |
setwd("/Users/nicholasgunady/Documents/covid-regression/Covid-Data") | |
dir <- "Covid-Data" | |
knitr::opts_chunk$set(echo = TRUE) | |
rm(list = ls()) | |
filedir <- getwd() | |
library(magrittr) | |
library(plyr) | |
library(dplyr) | |
library(tinytex) | |
library(readr) | |
library(ALSM) | |
#main CA demographics dataset | |
demo <- read.csv(file="demographics.csv") | |
#main working df | |
df.demo <- demo[2:58,c(3,4,7,8,9,10,11,14,17,18,19,20,21,22,23)] | |
df.demo[,c(2,4,6,8,12)] <- df.demo[,c(2,4,6,8,12)] / 100 #change % columns to decimal | |
#main covid case data from jhu.edu | |
#download all csv in folder | |
setwd("/Users/nicholasgunady/Documents/covid-regression/Covid-Data") | |
dir <- "Covid-Data" | |
filenames <- list.files(path=dir, pattern="*.csv", full.names=TRUE) | |
df.cov <- ldply(files, read_csv) | |
knitr::opts_chunk$set(echo = TRUE) | |
rm(list = ls()) | |
filedir <- getwd() | |
library(magrittr) | |
library(plyr) | |
library(dplyr) | |
library(tinytex) | |
library(readr) | |
library(ALSM) | |
#main CA demographics dataset | |
demo <- read.csv(file="demographics.csv") | |
#main working df | |
df.demo <- demo[2:58,c(3,4,7,8,9,10,11,14,17,18,19,20,21,22,23)] | |
df.demo[,c(2,4,6,8,12)] <- df.demo[,c(2,4,6,8,12)] / 100 #change % columns to decimal | |
#main covid case data from jhu.edu | |
#download all csv in folder | |
setwd("/Users/nicholasgunady/Documents/covid-regression/Covid-Data") | |
dir <- "Covid-Data" | |
filenames <- list.files(path=dir, pattern="*.csv", full.names=TRUE) | |
df.cov <- ldply(filenames, read_csv) | |
df.cov <- df.cov %>% filter(Country_Region == "CA") | |
#main covid case data from jhu.edu | |
#download all csv in folder | |
setwd("/Users/nicholasgunady/Documents/covid-regression/Covid-Data") | |
filenames <- list.files(path=dir, pattern="*.csv", full.names=TRUE) | |
setwd("~/Documents/covid-regression") | |
filenames <- list.files(path=dir, pattern="*.csv", full.names=TRUE) %>% str_remove("Covid-Data/") | |
library(stringr) | |
filenames <- list.files(path=dir, pattern="*.csv", full.names=TRUE) %>% str_remove("Covid-Data/") | |
df.cov <- ldply(filenames, read_csv) | |
getwd() | |
filedr | |
filedire | |
filedir | |
setwd("/Users/nicholasgunady/Documents/covid-regression/Covid-Data") | |
df.cov <- ldply(filenames, read_csv) | |
setwd("/Users/nicholasgunady/Documents/covid-regression/Covid-Data") | |
df.cov <- ldply(filenames, read_csv) | |
setwd("/Users/nicholasgunady/Documents/covid-regression/Covid-Data") | |
dir <- "Covid-Data" | |
filenames <- list.files(path=dir, pattern="*.csv", full.names=TRUE) %>% str_remove("Covid-Data/") | |
dir <- setwd("/Users/nicholasgunady/Documents/covid-regression/Covid-Data") | |
filenames <- list.files(path=dir, pattern="*.csv", full.names=TRUE) %>% str_remove("Covid-Data/") | |
setwd("/Users/nicholasgunady/Documents/covid-regression") | |
dir <- "Covid-Data" | |
filenames <- list.files(path=dir, pattern="*.csv", full.names=TRUE) %>% str_remove("Covid-Data/") | |
df.cov <- ldply(filenames, read_csv) | |
setwd("/Users/nicholasgunady/Documents/covid-regression/Covid-Data") | |
df.cov <- ldply(filenames, read_csv) | |
df.cov <- ldply(filenames, read.csv) | |
df.cov <- read.csv("owid-covid-data.csv") | |
# setwd("/Users/nicholasgunady/Documents/covid-regression") | |
# dir <- "Covid-Data" | |
# #get all csv filenames | |
# filenames <- list.files(path=dir, pattern="*.csv", full.names=TRUE) %>% str_remove("Covid-Data/") | |
setwd("/Users/nicholasgunady/Documents/covid-regression/Covid-Data") | |
setwd("/Users/nicholasgunady/Documents/covid-regression") | |
df.cov <- read.csv("owid-covid-data.csv") | |
df.cov <- df.cov %>% filter(location == "United States") | |
View(df.cov) | |
source("~/Documents/covid-regression/Covid-Data/compile.R", echo=TRUE) | |
source("~/Documents/covid-regression/Covid-Data/compile.R", echo=TRUE) | |
source("~/Documents/covid-regression/Covid-Data/compile.R", echo=TRUE) | |
source("~/Documents/covid-regression/Covid-Data/compile.R", echo=TRUE) | |
View(df.cov) | |
df <- df.cov %>% filter(Country_Region == "United States") | |
View(df) | |
df <- df.cov %>% filter(Country_Region == "CA") | |
View(df.cov) | |
df <- df.cov %>% filter(Province_State == "CA") | |
View(df.cov) | |
df <- df.cov %>% filter(Province_State == "California") | |
View(df) | |
df <- df.cov %>% filter(Province_State == "California") %>% rename(County = Admin2) | |
df <- df.cov %>% filter(Province_State == "California") %>% rename("County" = "Admin2") | |
library(dplyr) | |
df <- df.cov %>% filter(Province_State == "California") %>% rename("County" = "Admin2") | |
df <- df.cov %>% filter(Province_State == "California") %>% rename(County = Admin2) | |
df <- df %>% rename(County = Admin2) | |
df <- df %>% dplyr::rename(County = Admin2) | |
df <- df.cov %>% filter(Province_State == "California") %>% dplyr::rename(County = Admin2) | |
View(df) | |
df <- df %>% group_by(County) %>% count(name="Case.Count") | |
dir <- "Covid-Data2" | |
#get all csv filenames | |
filenames <- list.files(path=dir, pattern="*.csv", full.names=TRUE) %>% str_remove("Covid-Data/") | |
#get all csv filenames | |
filenames <- list.files(path=dir, pattern="*.csv", full.names=TRUE) | |
setwd("/Users/nicholasgunady/Documents/covid-regression") | |
dir <- "Covid-Data" | |
#get all csv filenames | |
filenames <- list.files(path=dir, pattern="*.csv", full.names=TRUE) %>% str_remove("Covid-Data/") | |
setwd("/Users/nicholasgunady/Documents/covid-regression/Covid-Data") | |
#mount all data to df.cov VERY COMPUTE HEAVY | |
df.cov <- ldply(filenames, read_csv) #careful, this is a very long loop | |
df <- df.cov %>% filter(Province_State == "California") %>% dplyr::rename(County = Admin2) | |
df <- df %>% group_by(County) %>% count(name="Case.Count") | |
df <- df %>% group_by(County) %>% sum(name="Case.Count") | |
df <- df %>% group_by(County) %>% sum() | |
df <- df %>% group_by(County) %>% summarise(Case.Count=sum) | |
View(df) | |
#mount all data to df.cov VERY COMPUTE HEAVY | |
# df.cov <- ldply(filenames, read_csv) #careful, this is a very long loop | |
df <- df.cov %>% filter(Province_State == "California") %>% dplyr::rename(County = Admin2) | |
View(df) | |
df <- df %>% group_by(County) %>% summarise(Case.Count=sum(Confirmed)) | |
View(df) | |
View(df) | |
#mount all data to df.cov VERY COMPUTE HEAVY | |
# df.cov <- ldply(filenames, read_csv) #careful, this is a very long loop | |
df <- df.cov %>% filter(Province_State == "California") %>% dplyr::rename(County = Admin2) | |
df <- df %>% group_by(County) | |
View(df) | |
df <- df %>% group_by(County) %>% summarise(Case.Count=sum(Confirmed)) | |
df <- df %>% group_by(County) %>% dplyr::summarise(Case.Count=sum(Confirmed)) | |
#mount all data to df.cov VERY COMPUTE HEAVY | |
# df.cov <- ldply(filenames, read_csv) #careful, this is a very long loop | |
df <- df.cov %>% filter(Province_State == "California") %>% dplyr::rename(County = Admin2) | |
df <- df %>% group_by(County) %>% dplyr::summarise(Case.Count=sum(Confirmed)) | |
View(df) | |
source("~/Documents/covid-regression/Covid-Data/compile.R", echo=TRUE) | |
source("~/Documents/covid-regression/Covid-Data/compile.R", echo=TRUE) | |
source("~/Documents/covid-regression/Covid-Data/compile.R", echo=TRUE) | |
#main covid case data from jhu.edu | |
covid <- read.csv(file="CA-2020-cov-data.csv") | |
knitr::opts_chunk$set(echo = TRUE) | |
rm(list = ls()) | |
filedir <- getwd() | |
library(magrittr) | |
library(plyr) | |
library(dplyr) | |
library(tinytex) | |
library(readr) | |
library(ALSM) | |
library(stringr) | |
#main CA demographics dataset | |
demo <- read.csv(file="demographics.csv") | |
#main working df | |
df.demo <- demo[2:58,c(3,4,7,8,9,10,11,14,17,18,19,20,21,22,23)] | |
df.demo[,c(2,4,6,8,12)] <- df.demo[,c(2,4,6,8,12)] / 100 #change % columns to decimal | |
#main covid case data from jhu.edu | |
covid <- read.csv(file="CA-2020-cov-data.csv") | |
plot(df.demo) | |
df.cov <- covid %>% select(-"Unassigned") | |
View(covid) | |
View(demo) | |
df.main <- left_join(df.demo, covid, by=County) | |
df.main <- left_join(df.demo, covid, by="County") | |
View(df.main) | |
View(df.main) | |
df.main <- left_join(df.demo, covid, by="County") %>% dplyr::select(County,Case.Count.2020,-X,everything()) | |
View(df.main) | |
#main covid case data from jhu.edu | |
covid <- read.csv(file="CA-2020-cov-data.csv") %>% subset(select=-"X") | |
#main covid case data from jhu.edu | |
covid <- read.csv(file="CA-2020-cov-data.csv") %>% subset(select=-c("X")) | |
df.main <- left_join(df.demo, covid, by="County") %>% dplyr::select(County,Case.Count.2020,everything() )%>% subset(select=-c("X")) | |
df.main <- df.main[,1:16] | |
View(df.main) | |
plot(df.main) | |
df.main <- left_join(df.demo, covid, by="County") %>% dplyr::select(Case.Count.2020,County,-X,everything()) | |
df.main <- df.main[,1:16] | |
plot(df.main) | |
#main covid case data from jhu.edu | |
covid <- read.csv(file="CA-2020-cov-data.csv") %>% rename(Cases = Case.Count.2020) | |
#main covid case data from jhu.edu | |
covid <- read.csv(file="CA-2020-cov-data.csv") %>% dplyr::rename(Cases = Case.Count.2020) | |
df.main <- left_join(df.demo, covid, by="County") %>% dplyr::select(Case.Count.2020,County,-X,everything()) | |
df.main <- df.main[,1:16] | |
#main covid case data from jhu.edu | |
covid <- read.csv(file="CA-2020-cov-data.csv") %>% dplyr::rename(Cases = Case.Count.2020) | |
df.main <- left_join(df.demo, covid, by="County") %>% dplyr::select(Case.Count.2020,County,-X,everything()) | |
df.main <- left_join(df.demo, covid, by="County") %>% dplyr::select(Cases,County,-X,everything()) | |
df.main <- df.main[,1:16] | |
df.main <- left_join(df.demo, covid, by="County") %>% dplyr::select(Cases,County,-X,everything()) | |
df.main <- df.main[,1:16] | |
```{r initial plotting} | |
plot(df.main) | |
mod.unemp <- lm(Cases~PERC.UNEMPLOYED,df.main) | |
mod.unemp <- lm(Cases~PERC.UNEMPLOYED,df.main) | |
summary(mod.unemp) | |
anova(mod.unemp) | |
mod.unemp <- lm(Cases~NUM.UNEMPLOYED,df.main) | |
summary(mod.unemp) | |
anova(mod.unemp) | |
mod.unemp <- lm(Cases~NUM.UNEMPLOYED,df.main) | |
summary(mod.unemp) | |
anova(mod.unemp) | |
mod.unemp <- lm(Cases~NUM.UNEMPLOYED,df.main) | |
summary(mod.unemp) | |
anova(mod.unemp) | |
trace1 <- predict(mod.unemp) | |
fig.age65 <- plot_ly(data = df.main, x = ~NUM.UNEMPLOYED, y = ~Cases,name='Data Points',type='scatter',mode='markers') %>% | |
add_trace(y = ~trace1, name = 'OLS',mode = 'lines') %>% | |
layout(title = 'Model Fit Covid-19 Cases with Unemployment') | |
fig.age65 <- plot_ly(data = df.main, x = ~NUM.UNEMPLOYED, y = ~Cases,name='Data Points',type='scatter',mode='markers') %>% | |
add_trace(y = ~trace1, name = 'OLS',mode = 'lines') %>% | |
layout(title = "Model Fit Covid-19 Cases with Unemployment") | |
mod.unemp <- lm(Cases~NUM.UNEMPLOYED,df.main) | |
summary(mod.unemp) | |
anova(mod.unemp) | |
trace1 <- predict(mod.unemp) | |
fig.age65 <- plot_ly(data = df.main, x = ~NUM.UNEMPLOYED, y = ~Cases,name='Data Points',type='scatter',mode='markers') %>% | |
add_trace(y = ~trace1, name = 'OLS',mode = 'lines') | |
library(magrittr) | |
library(plyr) | |
library(dplyr) | |
library(tinytex) | |
library(readr) | |
library(ALSM) | |
library(stringr) | |
library(plotly) | |
mod.unemp <- lm(Cases~NUM.UNEMPLOYED,df.main) | |
summary(mod.unemp) | |
anova(mod.unemp) | |
trace1 <- predict(mod.unemp) | |
fig.age65 <- plot_ly(data = df.main, x = ~NUM.UNEMPLOYED, y = ~Cases,name='Data Points',type='scatter',mode='markers') %>% | |
add_trace(y = ~trace1, name = 'OLS',mode = 'lines') %>% | |
layout(title = "Model Fit Covid-19 Cases with Unemployment") | |
fig.age65 | |
library(stats) | |
confint(mod.unemp) | |
fig.age65 <- plot_ly(data = df.main, x = ~NUM.UNEMPLOYED, y = ~Cases,name='Data Points',type='scatter',mode='markers') %>% | |
add_trace(y = ~trace1, name = 'Linear Model',mode = 'lines') %>% | |
layout(title = "Model Fit Covid-19 Cases with Unemployment") | |
mod.unemp <- lm(Cases~NUM.UNEMPLOYED,df.main) | |
summary(mod.unemp) | |
anova(mod.unemp) | |
confint(mod.unemp) | |
trace1 <- predict(mod.unemp) | |
fig.age65 <- plot_ly(data = df.main, x = ~NUM.UNEMPLOYED, y = ~Cases,name='Data Points',type='scatter',mode='markers') %>% | |
add_trace(y = ~trace1, name = 'Linear Model',mode = 'lines') %>% | |
layout(title = "Model Fit Covid-19 Cases with Unemployment") | |
fig.age65 | |
View(covid) | |
mod.fi <- lm(Cases~NUM.FOOD.INSECURE, df.main) | |
summary(mod.fi) | |
anova(mod.fi) | |
knitr::opts_chunk$set(echo = TRUE) | |
rm(list = ls()) | |
filedir <- getwd() | |
library(magrittr) | |
library(plyr) | |
library(dplyr) | |
library(tinytex) | |
library(readr) | |
library(ALSM) | |
library(stringr) | |
library(plotly) | |
library(stats) | |
#main CA demographics dataset | |
demo <- read.csv(file="demographics.csv") | |
#main working df | |
df.demo <- demo[2:58,c(3,4,7,8,9,10,11,14,17,18,19,20,21,22,23)] | |
df.demo[,c(2,4,6,8,12)] <- df.demo[,c(2,4,6,8,12)] / 100 #change % columns to decimal | |
#main covid case data from jhu.edu | |
covid <- read.csv(file="CA-2020-cov-data.csv") %>% dplyr::rename(Cases = Case.Count.2020) | |
df.main <- left_join(df.demo, covid, by="County") %>% dplyr::select(Cases,County,-X,everything()) | |
df.main <- df.main[,1:16] | |
plot(df.main) | |
mod.fi <- lm(Cases~NUM.FOOD.INSECURE, df.main) | |
summary(mod.fi) | |
anova(mod.fi) | |
#plot linear model and CI | |
newx = seq(min(x),max(x),by = 0.05) | |
#plot linear model and CI | |
newx = seq(min(df.main$NUM.FOOD.INSECURE),max(df.main$NUM.FOOD.INSECURE),by = 0.05) | |
mod.fi <- lm(Cases~NUM.FOOD.INSECURE, df.main) | |
summary(mod.fi) | |
anova(mod.fi) | |
#plot linear model and CI | |
newx = seq(min(df.main$NUM.FOOD.INSECURE),max(df.main$NUM.FOOD.INSECURE),by = 0.05) | |
ci.trace <- predict(lm.out, newdata=data.frame(x=newx), interval="confidence", | |
level = 0.95) | |
mod.fi <- lm(Cases~NUM.FOOD.INSECURE, df.main) | |
summary(mod.fi) | |
anova(mod.fi) | |
#plot linear model and CI | |
newx = seq(min(df.main$NUM.FOOD.INSECURE),max(df.main$NUM.FOOD.INSECURE),by = 0.05) | |
ci.trace <- predict(mod.fi, newdata=data.frame(x=newx), interval="confidence", | |
level = 0.95) | |
View(df.main) | |
mod.fi <- lm(Cases~NUM.FOOD.INSECURE, df.main) | |
summary(mod.fi) | |
anova(mod.fi) | |
#plot linear model and CI | |
newx = seq(min(df.main$NUM.FOOD.INSECURE),max(df.main$NUM.FOOD.INSECURE),by = 100) | |
ci.trace <- predict(mod.fi, newdata=data.frame(x=newx), interval="confidence", | |
level = 0.95) | |
mod.fi <- lm(Cases~NUM.FOOD.INSECURE, df.main) | |
summary(mod.fi) | |
anova(mod.fi) | |
#plot linear model and CI | |
newx = seq(min(df.main$NUM.FOOD.INSECURE),max(df.main$NUM.FOOD.INSECURE),by = 100) | |
ci.trace <- predict(mod.fi, df.main$NUM.FOOD.INSECURE, interval="confidence", | |
level = 0.95) | |
ci.trace <- predict(mod.fi,newx, interval="confidence", | |
level = 0.95) | |
#plot linear model and CI | |
newx = seq(min(df.main$NUM.FOOD.INSECURE),max(df.main$NUM.FOOD.INSECURE),by = 100) %>% | |
as.data.frame | |
ci.trace <- predict(mod.fi,newx, interval="confidence", | |
level = 0.95) | |
#plot linear model and CI | |
newx = seq(min(df.main$NUM.FOOD.INSECURE),max(df.main$NUM.FOOD.INSECURE),by = 100) %>% | |
list | |
ci.trace <- predict(mod.fi,newx, interval="confidence", | |
level = 0.95) | |
df.main$NUM.FOOD.INSECURE | |
newx | |
#plot linear model and CI | |
newx = seq(min(df.main$NUM.FOOD.INSECURE),max(df.main$NUM.FOOD.INSECURE),by = 1200) %>% | |
list | |
ci.trace <- predict(mod.fi,newx, interval="confidence", | |
level = 0.95) | |
library(car) | |
ci.trace <- car::predict(mod.fi,newx, interval="confidence", | |
level = 0.95) | |
ci.trace <- predict(mod.fi,newx, interval="confidence", | |
level = 0.95) | |
ci.trace <- stats::predict(mod.fi,newx, interval="confidence", | |
level = 0.95) | |
ci.trace <- car::predict(mod.fi,newx, interval="confidence", | |
level = 0.95) | |
ci.trace <- car::Predict(mod.fi,newx, interval="confidence", | |
level = 0.95) | |
fig.age65 <- plot_ly(data = df.main, x = ~NUM.UNEMPLOYED, y = ~Cases,name='Data Points',type='scatter',mode='markers') %>% | |
add_trace(y = ~lm.trace, name = 'Linear Model',mode = 'lines') %>% | |
add_trace(y = ~ci.trace, name = '95% Confidence Interval',mode = 'lines') %>% | |
layout(title = "Model Fit Covid-19 Cases with Food Insecurity") | |
fig.fi <- plot_ly(data = df.main, x = ~NUM.UNEMPLOYED, y = ~Cases,name='Data Points',type='scatter',mode='markers') %>% | |
add_trace(y = ~lm.trace, name = 'Linear Model',mode = 'lines') %>% | |
add_trace(y = ~ci.trace, name = '95% Confidence Interval',mode = 'lines') %>% | |
layout(title = "Model Fit Covid-19 Cases with Food Insecurity") | |
fig.fi | |
mod.fi <- lm(Cases~NUM.FOOD.INSECURE, df.main) | |
summary(mod.fi) | |
anova(mod.fi) | |
#plot linear model and CI | |
# newx = seq(min(df.main$NUM.FOOD.INSECURE),max(df.main$NUM.FOOD.INSECURE),by = 1200) %>% | |
# list | |
# ci.trace <- car::Predict(mod.fi,newx, interval="confidence", | |
# level = 0.95) | |
lm.trace <- predict(mod.unemp) | |
mod.fi <- lm(Cases~NUM.FOOD.INSECURE, df.main) | |
summary(mod.fi) | |
anova(mod.fi) | |
#plot linear model and CI | |
# newx = seq(min(df.main$NUM.FOOD.INSECURE),max(df.main$NUM.FOOD.INSECURE),by = 1200) %>% | |
# list | |
# ci.trace <- car::Predict(mod.fi,newx, interval="confidence", | |
# level = 0.95) | |
lm.trace <- predict(mod.fi) | |
fig.fi <- plot_ly(data = df.main, x = ~NUM.UNEMPLOYED, y = ~Cases,name='Data Points',type='scatter',mode='markers') %>% | |
add_trace(y = ~lm.trace, name = 'Linear Model',mode = 'lines') %>% | |
# add_trace(y = ~ci.trace, name = '95% Confidence Interval',mode = 'lines') %>% | |
layout(title = "Model Fit Covid-19 Cases with Food Insecurity") | |
fig.fi | |
plot.lm(mod.fi) | |
plot(mod.fi) | |
#plot linear model and CI | |
plot(mod.fi,abline(mod.fi)) | |
#plot data with regression line | |
plot(X,Y,pch = 16, cex = 1.3, col = "blue", main = "Confirmed COVID-19 Cases vs. Food Insecurity", xlab = "Food Insecurity", ylab = "Confirmed COVID-19 Cases") | |
Y <- df.main$Cases | |
X <- df.main$NUM.FOOD.INSECURE | |
mod.fi <- lm(Y~X, df.main) | |
summary(mod.fi) | |
anova(mod.fi) | |
#plot linear model data | |
plot(mod.fi) | |
#plot data with regression line | |
plot(X,Y,pch = 16, cex = 1.3, col = "blue", main = "Confirmed COVID-19 Cases vs. Food Insecurity", xlab = "Food Insecurity", ylab = "Confirmed COVID-19 Cases") | |
abline(mod.fi) | |
Y <- df.main$Cases | |
X <- df.main$NUM.FOOD.INSECURE | |
mod.fi <- lm(Y~X, df.main) | |
summary(mod.fi) | |
anova(mod.fi) | |
#plot linear model data | |
plot(mod.fi) | |
#plot data with regression line | |
plot(X,Y,pch = 16, cex = 1.3, col = "blue", main = "Confirmed COVID-19 Cases vs. Food Insecurity", xlab = "Food Insecurity", ylab = "Confirmed COVID-19 Cases") | |
abline(mod.fi) | |
install.packages('reshape2') | |
install.packages('tidymodels') | |
Y <- df.main$Cases | |
X <- df.main$NUM.FOOD.INSECURE | |
mod.fi <- lm(Y~X, df.main) | |
summary(mod.fi) | |
anova(mod.fi) | |
#plot linear model data | |
plot(mod.fi) | |
#plot data with regression line | |
plot(X,Y,pch = 16, cex = 1.3, col = "blue", main = "Confirmed COVID-19 Cases vs. Food Insecurity", xlab = "Food Insecurity", ylab = "Confirmed COVID-19 Cases") | |
abline(mod.fi) | |
#Plotly Regression | |
lm_model <- linear_reg() %>% | |
set_engine('lm') %>% | |
set_mode('regression') %>% | |
fit(Y ~ X, data = df.main) | |
Y <- df.main$Cases | |
X <- df.main$NUM.FOOD.INSECURE | |
mod.fi <- lm(Y~X, df.main) | |
summary(mod.fi) | |
anova(mod.fi) | |
#plot linear model data | |
plot(mod.fi) | |
#plot data with regression line | |
plot(X,Y,pch = 16, cex = 1.3, col = "blue", main = "Confirmed COVID-19 Cases vs. Food Insecurity", xlab = "Food Insecurity", ylab = "Confirmed COVID-19 Cases") | |
abline(mod.fi) | |
#Plotly Regression | |
lm_model <- linear_reg() %>% | |
set_engine('lm') %>% | |
set_mode('regression') %>% | |
tidymodels::fit(Y ~ X, data = df.main) | |
library(magrittr) | |
library(plyr) | |
library(dplyr) | |
library(tinytex) | |
library(readr) | |
library(ALSM) | |
library(stringr) | |
library(plotly) | |
library(stats) | |
#plotly Regression packages | |
library(reshape2) # to load tips data | |
library(tidyverse) | |
library(tidymodels) # for the fit() function | |
install.packages('tidymodels') | |
install.packages("tidymodels") | |
install.packages("tidymodels") | |
install.packages("tidymodels") | |
knitr::opts_chunk$set(echo = TRUE) | |
rm(list = ls()) | |
filedir <- getwd() | |
library(tidymodels) # for the fit() function | |
library(magrittr) | |
library(plyr) | |
library(dplyr) | |
library(tinytex) | |
library(readr) | |
library(ALSM) | |
library(stringr) | |
library(plotly) | |
library(stats) | |
#plotly Regression packages | |
library(reshape2) # to load tips data | |
library(tidyverse) | |
library(magrittr) | |
library(tinytex) | |
library(ALSM) | |
library(stringr) | |
library(stats) | |
#plotly Regression packages | |
library(reshape2) # to load tips data | |
library(tidyverse) | |
library(magrittr) | |
library(tinytex) | |
library(ALSM) | |
library(stringr) | |
library(stats) | |
#plotly Regression packages | |
library(reshape2) # to load tips data | |
library(tidymodels) # for the fit() function | |
install.packages('tidyr') | |
install.packages("tidyr") | |
library(magrittr) | |
library(tinytex) | |
library(ALSM) | |
library(stringr) | |
library(stats) | |
#plotly Regression packages | |
library(reshape2) # to load tips data | |
library(tidymodels) # for the fit() function | |
library(tidyr) | |
detach("package:tidyr", unload = TRUE) | |
source("~/.active-rstudio-document", echo=TRUE) | |
source("~/.active-rstudio-document") |