Update README.md

README.md

@@ -10,3 +10,21 @@ ODE model of viral and immune dynamics in response to treatment of SIV with IL-1
 'N803_shared_noN.m' = repeat of 'N803_shared.m' without non-SIV-specific CD8+ T cells
 
 'N803_single.m' = calls 'N803_model_2.m', but first solves for ICs and parameters to start from one fixed point
+
+'Analyzer' folder:
+
+  -> 'calibrator.m' = calibrates model parameters via multi-start local-search
+
+  -> 'calibrator_plot.m' = plots results from calibrator.m
+
+  -> 'costFun_NLL' = model cost calculator (NLL,SSE,MSE w/additional options) [used with 'calibrator.m']
+
+  -> 'looper.m' = loops through and operates on a structure array [used by 'calibrator.m']
+
+  -> 'MCMCsampler.m' = performs uncertainty quantification via markov chain monte carlo [needs result file from 'calibrator.m']
+
+  -> 'performPT.m' = parallel tempering MCMC algorithm [called by 'MCMCsampler.m']
+
+  -> 'prepper.m' = normalizes a data set and provides several useful outputs [used with 'calibrator.m']
+
+  -> 'sampler.m' = samples a parameter space via latin hypercube sampling [used by 'calibrator.m']