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Update README.md
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cody2 authored Dec 25, 2022
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Expand Up @@ -5,22 +5,6 @@ Multi-scale model of viral and immune dynamics in response to treatment with IL-

'N803_model_2.m' = single-compartment model for article 2

'sorter.m' = function that sorts results from 'calibrator.m' by outcome
'N803_shared.m' = calls 'N803_model_2.m', but first solves for ICs and shared parameters to start from two fixed points

'Legacy Code' = folder for older versions of code that has either been condensed or moved to another repository

'HIV_model_5.m' = version 5 (seperates CD8+ T cells into resting, active-proliferating, and active-effector populations)

'HIV_model_4.m' = version 4 (adds density-dependent drug-induced proliferation and immune suppression of effector population)

'HIV_model_3.m' = version 3 of simplified model (removed IL15 and adds tolerance and exhaustion delay compartments)

'HIV_model_2.m' = version 2 of simplified model (homeostasis by density-dependent proliferation rather than generation)

'HIV_model_1.m' = simplified model used in BMES2018 poster

'plotter_model_5.m' = function that plot results from 'calibrator.m' (specific to HIV_model_5)

'plotter_model_4.m' = function that plot results from 'calibrator.m' (specific to HIV_model_4)

'plotter.m' = function that plot results from 'calibrator.m' (specific to HIV_model_2)
'N803_single.m' = calls 'N803_model_2.m', but first solves for ICs and parameters to start from one fixed point

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