Fixed codestyle

src/graphs.py

@@ -1,14 +1,15 @@
 """Classes to create bulk, surface, and adsorbate graphs."""
 
 import abc
+
 import networkx as nx
 import numpy as np
-
 from ase.neighborlist import build_neighbor_list
 
 
 class AtomsGraph:
     """Create graph representation of a collection of atoms."""
+
     def __init__(self, atoms, select_idx, max_atoms=50):
         """Initialize variables of the class.
 
@@ -64,7 +65,7 @@ def create_graph(self):
                         nn,
                         atomic_number=self.atoms[nn].number,
                         symbol=self.atoms[nn].symbol,
-                        position=self.atoms[nn].position
+                        position=self.atoms[nn].position,
                     )
                 # Calculate bond distance
                 bond_dist = np.linalg.norm(
@@ -74,7 +75,7 @@ def create_graph(self):
 
         # Assign graph object
         self.graph = graph
-    
+
     def featurize(self, node_featurizer, bond_featurizer):
         """Featurize nodes and edges of the graph.
 
@@ -89,7 +90,7 @@ def featurize(self, node_featurizer, bond_featurizer):
 
     def plot(self, filename=None):
         """Plot the graph using NetworkX.
-        
+
         Parameters
         ----------
         filename: str (optional)
@@ -99,21 +100,20 @@ def plot(self, filename=None):
 
     def get_node_tensor(self):
         """Get the node matrix of the graph as a PyTorch Tensor.
-        
+
         Returns
         -------
         node_matrix: torch.Tensor
             Node matrix
         """
         pass
-    
+
     def get_edge_tensor(self):
         """Get the edge matrix of the graph as a PyTorch Tensor.
-        
+
         Returns
         -------
         edge_matrix: torch.Tensor
             Edge tensor
         """
         pass
-