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This folder includes all the ODE code, simulated data, empirical data, and analyzing scripts.

  • full Model

ODE: ODESImmunity_v14_new.R

Parameter file: v13_param.csvv14_param.csvv15_param.csv

Results: v628_results_all.csv

  • GI only model


Parameter file: v13_GIMean_param.csv

Results: v13_GIMean_results.csv

  • Policy change

ODE: policy_change.R

Input: output of the full model,v628_results_all.csv

  • Empirical

Resistance Frequency data: WWARN_ACT_Partner_Drug_Mol_Surveyor_Data_2022.xls

Prevalence: analysis_uniqueGeo.csv

Continents: continents.csv

Drug Usage: DrugUsage.xlsx