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MalariaResistance/README.md

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# MalariaResistance
This folder includes all the ODE code, simulated data, empirical data, and analyzing scripts.
- full Model
ODE: `ODESImmunity_v14_new.R`
Parameter file: `v13_param.csv`，`v14_param.csv`，`v15_param.csv`
Results: `v628_results_all.csv`
- GI only model
ODE: `ODESGIMean_v13.R`
Parameter file: `v13_GIMean_param.csv`
Results: `v13_GIMean_results.csv`
- Policy change
ODE: `policy_change.R`
Input: output of the full model，`v628_results_all.csv`
- Empirical
Resistance Frequency data: `WWARN_ACT_Partner_Drug_Mol_Surveyor_Data_2022.xls`
Prevalence: `analysis_uniqueGeo.csv`
Continents: `continents.csv`
Drug Usage: `DrugUsage.xlsx`