elife-R1

HeLab · Dec 7, 2023 · 8b1a371 · 8b1a371
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diff --git a/.DS_Store b/.DS_Store
diff --git a/.Rhistory b/.Rhistory
diff --git a/.gitignore b/.gitignore
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+.DS_Store
+*/.DS_Store
diff --git a/Empirical/VC_D.xlsx b/Empirical/VC_D.xlsx
diff --git a/Empirical/~$VC_D.xlsx b/Empirical/~$VC_D.xlsx
diff --git a/Figures/fig1_ModelDrugRes_v12.pdf b/Figures/fig1_ModelDrugRes_v12.pdf
diff --git a/Figures/fig2.pdf b/Figures/fig2.pdf
diff --git a/Figures/fig2.png b/Figures/fig2.png
diff --git a/Figures/fig2.tiff b/Figures/fig2.tiff
diff --git a/Figures/fig3_empRange.pdf b/Figures/fig3_empRange.pdf
diff --git a/Figures/fig3_empRange.png b/Figures/fig3_empRange.png
diff --git a/Figures/fig3_empRange.tiff b/Figures/fig3_empRange.tiff
diff --git a/Figures/fig3_empprev.pdf b/Figures/fig3_empprev.pdf
diff --git a/Figures/fig3_empprev.png b/Figures/fig3_empprev.png
diff --git a/Figures/fig3_empprev.tiff b/Figures/fig3_empprev.tiff
diff --git a/Figures/fig4_propHost.pdf b/Figures/fig4_propHost.pdf
diff --git a/Figures/fig4_propHost.png b/Figures/fig4_propHost.png
diff --git a/Figures/fig4_propHost.tiff b/Figures/fig4_propHost.tiff
diff --git a/Figures/fig5_combinedPanels.pdf b/Figures/fig5_combinedPanels.pdf
diff --git a/Figures/fig5_combinedPanels.png b/Figures/fig5_combinedPanels.png
diff --git a/Figures/fig5_combinedPanels.tiff b/Figures/fig5_combinedPanels.tiff
diff --git a/Figures/fig5_policy.pdf b/Figures/fig5_policy.pdf
diff --git a/Figures/fig5_policy.png b/Figures/fig5_policy.png
diff --git a/Figures/fig5_policy.tiff b/Figures/fig5_policy.tiff
diff --git a/Figures/fig6_policy.pdf b/Figures/fig6_policy.pdf
diff --git a/Figures/fig6_policy.png b/Figures/fig6_policy.png
diff --git a/Figures/fig7_empDrug_Traject_policy.pdf b/Figures/fig7_empDrug_Traject_policy.pdf
diff --git a/Figures/fig7_empDrug_Traject_policy.png b/Figures/fig7_empDrug_Traject_policy.png
diff --git a/Figures/fig7_empDrug_Traject_policy.tiff b/Figures/fig7_empDrug_Traject_policy.tiff
diff --git a/Figures/figS1_compartmentModel.pdf b/Figures/figS1_compartmentModel.pdf
diff --git a/Figures/figS1_compartmentModel.tiff b/Figures/figS1_compartmentModel.tiff
diff --git a/Figures/figS1_compartmentModel_v2.png b/Figures/figS1_compartmentModel_v2.png
diff --git a/Figures/figS1_compartmentModel_v3.png b/Figures/figS1_compartmentModel_v3.png
diff --git a/Figures/figS2_PW_prev.pdf b/Figures/figS2_PW_prev.pdf
diff --git a/Figures/figS2_PW_prev.png b/Figures/figS2_PW_prev.png
diff --git a/Figures/figS2_PW_prev.tiff b/Figures/figS2_PW_prev.tiff
diff --git a/Figures/figS3_infectivity.pdf b/Figures/figS3_infectivity.pdf
diff --git a/Figures/figS3_infectivity.png b/Figures/figS3_infectivity.png
diff --git a/Figures/figS3_infectivity.tiff b/Figures/figS3_infectivity.tiff
diff --git a/Figures/figS4_prevResist.pdf b/Figures/figS4_prevResist.pdf
diff --git a/Figures/figS4_prevResist.png b/Figures/figS4_prevResist.png
diff --git a/Figures/figS4_prevResist.tiff b/Figures/figS4_prevResist.tiff
diff --git a/Figures/figS5_policyRaster.pdf b/Figures/figS5_policyRaster.pdf
diff --git a/Figures/figS5_policyRaster.png b/Figures/figS5_policyRaster.png
diff --git a/Figures/figS5_policyRaster.tiff b/Figures/figS5_policyRaster.tiff
diff --git a/Figures/figS5_prevResist.pdf b/Figures/figS5_prevResist.pdf
diff --git a/Figures/figS5_prevResist.png b/Figures/figS5_prevResist.png
diff --git a/Figures/figS5_prevResist.tiff b/Figures/figS5_prevResist.tiff
diff --git a/Figures/figS6_GIonlyModel.pdf b/Figures/figS6_GIonlyModel.pdf
diff --git a/Figures/figS6_GIonlyModel.png b/Figures/figS6_GIonlyModel.png
diff --git a/Figures/figS6_GIonlyModel.tiff b/Figures/figS6_GIonlyModel.tiff
diff --git a/Figures/figS7_GIComp.pdf b/Figures/figS7_GIComp.pdf
diff --git a/Figures/figS7_GIComp.png b/Figures/figS7_GIComp.png
diff --git a/Figures/figS7_GIComp.tiff b/Figures/figS7_GIComp.tiff
diff --git a/Figures/figS8_GIpolicy.pdf b/Figures/figS8_GIpolicy.pdf
diff --git a/Figures/figS8_GIpolicy.png b/Figures/figS8_GIpolicy.png
diff --git a/Figures/figS8_GIpolicy.tiff b/Figures/figS8_GIpolicy.tiff
diff --git a/GI_policy/.Rhistory b/GI_policy/.Rhistory
diff --git a/GI_policy/GI_policy.R b/GI_policy/GI_policy.R
diff --git a/GI_policy/GI_policy_results.csv b/GI_policy/GI_policy_results.csv
diff --git a/GI_policy/submit_policy.sbatch b/GI_policy/submit_policy.sbatch
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+#!/bin/bash
+#SBATCH --job-name=GI_policy
+#SBATCH --time=20:00:00
+#SBATCH --output=errMsg/RL_%A_%a.out
+#SBATCH --error=errMsg/RL_%A_%a.out
+#SBATCH --array=1-360
+#SBATCH --tasks=1
+#SBATCH --cpus-per-task=1
+#SBATCH --mem-per-cpu=1500
+#SBATCH --account=heqixin
+#SBATCH --mail-type=ALL
+#SBATCH --mail-user=heqixin@purdue.edu
+
+# Print this sub-job's task ID
+echo "My SLURM_ARRAY_TASK_ID: " $SLURM_ARRAY_TASK_ID
+module load r/4.2.2
+
+
+Rscript GI_policy.R v13_GIMean_results.csv $SLURM_ARRAY_TASK_ID ./ $SLURM_JOB_ID
+
+
diff --git a/GI_policy/v13_GIMean_results.csv b/GI_policy/v13_GIMean_results.csv