clean up of example reuns

MintonGroup · Aug 29, 2019 · 78e6ea2 · 78e6ea2
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diff --git a/.gitignore b/.gitignore
@@ -24,3 +24,7 @@ INSTALL
 Makefile.in
 
 config/
+
+examples/global-lunar-bombardment/.DS_Store
+
+examples/mare-with-rays-model2/.DS_Store
diff --git a/examples/.DS_Store b/examples/.DS_Store
diff --git a/tests/global-lunar-bombardment/CTEM → examples/global-lunar-bombardment/CTEM b/tests/global-lunar-bombardment/CTEM → examples/global-lunar-bombardment/CTEM
diff --git a/.../Minton_et_al_2019_ray2/FassettCounts.txt → ...lobal-lunar-bombardment/FassettCounts.txt b/.../Minton_et_al_2019_ray2/FassettCounts.txt → ...lobal-lunar-bombardment/FassettCounts.txt
diff --git a/...nt/LOLASethCraterCatalogv8gt20-binned.dat → ...nt/LOLASethCraterCatalogv8gt20-binned.dat b/...nt/LOLASethCraterCatalogv8gt20-binned.dat → ...nt/LOLASethCraterCatalogv8gt20-binned.dat
diff --git a/tests/global-lunar-bombardment/NPFextrap.dat → ...es/global-lunar-bombardment/NPFextrap.dat b/tests/global-lunar-bombardment/NPFextrap.dat → ...es/global-lunar-bombardment/NPFextrap.dat
diff --git a/tests/Minton_et_al_2019_ray2/cleanup → examples/global-lunar-bombardment/cleanup b/tests/Minton_et_al_2019_ray2/cleanup → examples/global-lunar-bombardment/cleanup
diff --git a/tests/global-lunar-bombardment/coeffit.dat → ...ples/global-lunar-bombardment/coeffit.dat b/tests/global-lunar-bombardment/coeffit.dat → ...ples/global-lunar-bombardment/coeffit.dat
diff --git a/tests/global-lunar-bombardment/counttest.eps → ...es/global-lunar-bombardment/counttest.eps b/tests/global-lunar-bombardment/counttest.eps → ...es/global-lunar-bombardment/counttest.eps
diff --git a/tests/global-lunar-bombardment/ctem.in → examples/global-lunar-bombardment/ctem.in b/tests/global-lunar-bombardment/ctem.in → examples/global-lunar-bombardment/ctem.in
diff --git a/tests/Minton_et_al_2019_ray2/ctem_driver.pro → .../global-lunar-bombardment/ctem_driver.pro b/tests/Minton_et_al_2019_ray2/ctem_driver.pro → .../global-lunar-bombardment/ctem_driver.pro
diff --git a/...s/global-lunar-bombardment/ctem_driver.py → ...s/global-lunar-bombardment/ctem_driver.py b/...s/global-lunar-bombardment/ctem_driver.py → ...s/global-lunar-bombardment/ctem_driver.py
diff --git a/...Minton_et_al_2019_ray2/ctem_image_dem.pro → ...obal-lunar-bombardment/ctem_image_dem.pro b/...Minton_et_al_2019_ray2/ctem_image_dem.pro → ...obal-lunar-bombardment/ctem_image_dem.pro
diff --git a/..._al_2019_ray2/ctem_image_presentation.pro → ...r-bombardment/ctem_image_presentation.pro b/..._al_2019_ray2/ctem_image_presentation.pro → ...r-bombardment/ctem_image_presentation.pro
diff --git a/...n_et_al_2019_ray2/ctem_image_regolith.pro → ...lunar-bombardment/ctem_image_regolith.pro b/...n_et_al_2019_ray2/ctem_image_regolith.pro → ...lunar-bombardment/ctem_image_regolith.pro
diff --git a/...al_2019_ray2/ctem_image_shaded_relief.pro → ...-bombardment/ctem_image_shaded_relief.pro b/...al_2019_ray2/ctem_image_shaded_relief.pro → ...-bombardment/ctem_image_shaded_relief.pro
diff --git a/...on_et_al_2019_ray2/ctem_io_read_input.pro → ...-lunar-bombardment/ctem_io_read_input.pro b/...on_et_al_2019_ray2/ctem_io_read_input.pro → ...-lunar-bombardment/ctem_io_read_input.pro
diff --git a/...nton_et_al_2019_ray2/ctem_io_read_old.pro → ...al-lunar-bombardment/ctem_io_read_old.pro b/...nton_et_al_2019_ray2/ctem_io_read_old.pro → ...al-lunar-bombardment/ctem_io_read_old.pro
diff --git a/...Minton_et_al_2019_ray2/ctem_io_readers.py → ...obal-lunar-bombardment/ctem_io_readers.py b/...Minton_et_al_2019_ray2/ctem_io_readers.py → ...obal-lunar-bombardment/ctem_io_readers.py
diff --git a/...Minton_et_al_2019_ray2/ctem_io_writers.py → ...obal-lunar-bombardment/ctem_io_writers.py b/...Minton_et_al_2019_ray2/ctem_io_writers.py → ...obal-lunar-bombardment/ctem_io_writers.py
diff --git a/...n_et_al_2019_ray2/ctem_window_display.pro → ...lunar-bombardment/ctem_window_display.pro b/...n_et_al_2019_ray2/ctem_window_display.pro → ...lunar-bombardment/ctem_window_display.pro
diff --git a/tests/global-lunar-bombardment/fit.log → examples/global-lunar-bombardment/fit.log b/tests/global-lunar-bombardment/fit.log → examples/global-lunar-bombardment/fit.log
diff --git a/tests/global-lunar-bombardment/getjob → examples/global-lunar-bombardment/getjob b/tests/global-lunar-bombardment/getjob → examples/global-lunar-bombardment/getjob
diff --git a/...19_ray2/lunar-MBA-impactor-velocities.dat → ...ardment/lunar-MBA-impactor-velocities.dat b/...19_ray2/lunar-MBA-impactor-velocities.dat → ...ardment/lunar-MBA-impactor-velocities.dat
diff --git a/...bal-lunar-bombardment/misc/ctem000001.dat → ...bal-lunar-bombardment/misc/ctem000001.dat b/...bal-lunar-bombardment/misc/ctem000001.dat → ...bal-lunar-bombardment/misc/ctem000001.dat
diff --git a/tests/global-lunar-bombardment/runjob → examples/global-lunar-bombardment/runjob b/tests/global-lunar-bombardment/runjob → examples/global-lunar-bombardment/runjob
diff --git a/tests/Minton_et_al_2019_ray2/start.in → examples/global-lunar-bombardment/start.in b/tests/Minton_et_al_2019_ray2/start.in → examples/global-lunar-bombardment/start.in
diff --git a/examples/mare-with-rays-model2/CTEM b/examples/mare-with-rays-model2/CTEM
@@ -0,0 +1 @@
+../../build/src/CTEM
diff --git a/...lobal-lunar-bombardment/FassettCounts.txt → ...s/mare-with-rays-model2/FassettCounts.txt b/...lobal-lunar-bombardment/FassettCounts.txt → ...s/mare-with-rays-model2/FassettCounts.txt
diff --git a/tests/Minton_et_al_2019_ray2/RAYPARAMS.txt → examples/mare-with-rays-model2/RAYPARAMS.txt b/tests/Minton_et_al_2019_ray2/RAYPARAMS.txt → examples/mare-with-rays-model2/RAYPARAMS.txt
diff --git a/.../Robbins2014-A15-FassettCounts-binned.dat → .../Robbins2014-A15-FassettCounts-binned.dat b/.../Robbins2014-A15-FassettCounts-binned.dat → .../Robbins2014-A15-FassettCounts-binned.dat
diff --git a/tests/global-lunar-bombardment/cleanup → examples/mare-with-rays-model2/cleanup b/tests/global-lunar-bombardment/cleanup → examples/mare-with-rays-model2/cleanup
diff --git a/tests/Minton_et_al_2019_ray2/ctem.in → examples/mare-with-rays-model2/ctem.in b/tests/Minton_et_al_2019_ray2/ctem.in → examples/mare-with-rays-model2/ctem.in
diff --git a/.../global-lunar-bombardment/ctem_driver.pro → ...les/mare-with-rays-model2/ctem_driver.pro b/.../global-lunar-bombardment/ctem_driver.pro → ...les/mare-with-rays-model2/ctem_driver.pro
diff --git a/tests/Minton_et_al_2019_ray2/ctem_driver.py → ...ples/mare-with-rays-model2/ctem_driver.py b/tests/Minton_et_al_2019_ray2/ctem_driver.py → ...ples/mare-with-rays-model2/ctem_driver.py
diff --git a/...obal-lunar-bombardment/ctem_image_dem.pro → .../mare-with-rays-model2/ctem_image_dem.pro b/...obal-lunar-bombardment/ctem_image_dem.pro → .../mare-with-rays-model2/ctem_image_dem.pro
diff --git a/...r-bombardment/ctem_image_presentation.pro → ...h-rays-model2/ctem_image_presentation.pro b/...r-bombardment/ctem_image_presentation.pro → ...h-rays-model2/ctem_image_presentation.pro
diff --git a/...lunar-bombardment/ctem_image_regolith.pro → ...-with-rays-model2/ctem_image_regolith.pro b/...lunar-bombardment/ctem_image_regolith.pro → ...-with-rays-model2/ctem_image_regolith.pro
diff --git a/...-bombardment/ctem_image_shaded_relief.pro → ...-rays-model2/ctem_image_shaded_relief.pro b/...-bombardment/ctem_image_shaded_relief.pro → ...-rays-model2/ctem_image_shaded_relief.pro
diff --git a/...-lunar-bombardment/ctem_io_read_input.pro → ...e-with-rays-model2/ctem_io_read_input.pro b/...-lunar-bombardment/ctem_io_read_input.pro → ...e-with-rays-model2/ctem_io_read_input.pro
diff --git a/...al-lunar-bombardment/ctem_io_read_old.pro → ...are-with-rays-model2/ctem_io_read_old.pro b/...al-lunar-bombardment/ctem_io_read_old.pro → ...are-with-rays-model2/ctem_io_read_old.pro
diff --git a/...obal-lunar-bombardment/ctem_io_readers.py → .../mare-with-rays-model2/ctem_io_readers.py b/...obal-lunar-bombardment/ctem_io_readers.py → .../mare-with-rays-model2/ctem_io_readers.py
diff --git a/...obal-lunar-bombardment/ctem_io_writers.py → .../mare-with-rays-model2/ctem_io_writers.py b/...obal-lunar-bombardment/ctem_io_writers.py → .../mare-with-rays-model2/ctem_io_writers.py
diff --git a/...lunar-bombardment/ctem_window_display.pro → ...-with-rays-model2/ctem_window_display.pro b/...lunar-bombardment/ctem_window_display.pro → ...-with-rays-model2/ctem_window_display.pro
diff --git a/tests/Minton_et_al_2019_ray2/eta-3.2.dat → examples/mare-with-rays-model2/eta-3.2.dat b/tests/Minton_et_al_2019_ray2/eta-3.2.dat → examples/mare-with-rays-model2/eta-3.2.dat
diff --git a/...ardment/lunar-MBA-impactor-velocities.dat → ...-model2/lunar-MBA-impactor-velocities.dat b/...ardment/lunar-MBA-impactor-velocities.dat → ...-model2/lunar-MBA-impactor-velocities.dat
diff --git a/tests/Minton_et_al_2019_ray2/params.plt → examples/mare-with-rays-model2/params.plt b/tests/Minton_et_al_2019_ray2/params.plt → examples/mare-with-rays-model2/params.plt
diff --git a/tests/Minton_et_al_2019_ray2/runjob → examples/mare-with-rays-model2/runjob b/tests/Minton_et_al_2019_ray2/runjob → examples/mare-with-rays-model2/runjob
diff --git a/tests/global-lunar-bombardment/start.in → examples/mare-with-rays-model2/start.in b/tests/global-lunar-bombardment/start.in → examples/mare-with-rays-model2/start.in
diff --git a/tests/morphology_test_cases/.DS_Store → examples/morphology_test_cases/.DS_Store b/tests/morphology_test_cases/.DS_Store → examples/morphology_test_cases/.DS_Store
diff --git a/examples/morphology_test_cases/complex/CTEM b/examples/morphology_test_cases/complex/CTEM
@@ -0,0 +1 @@
+../../../build/src/CTEM
diff --git a/...s/mare-with-rays-model2/FassettCounts.txt → ...logy_test_cases/complex/FassettCounts.txt b/...s/mare-with-rays-model2/FassettCounts.txt → ...logy_test_cases/complex/FassettCounts.txt
diff --git a/...ex/LOLASethCraterCatalogv8gt20-binned.dat → ...ex/LOLASethCraterCatalogv8gt20-binned.dat b/...ex/LOLASethCraterCatalogv8gt20-binned.dat → ...ex/LOLASethCraterCatalogv8gt20-binned.dat
diff --git a/...rphology_test_cases/complex/NPFextrap.dat → ...rphology_test_cases/complex/NPFextrap.dat b/...rphology_test_cases/complex/NPFextrap.dat → ...rphology_test_cases/complex/NPFextrap.dat
diff --git a/..._pycache__/ctem_io_readers.cpython-37.pyc → ..._pycache__/ctem_io_readers.cpython-37.pyc b/..._pycache__/ctem_io_readers.cpython-37.pyc → ..._pycache__/ctem_io_readers.cpython-37.pyc
diff --git a/..._pycache__/ctem_io_writers.cpython-37.pyc → ..._pycache__/ctem_io_writers.cpython-37.pyc b/..._pycache__/ctem_io_writers.cpython-37.pyc → ..._pycache__/ctem_io_writers.cpython-37.pyc
diff --git a/tests/morphology_test_cases/complex/cleanup → ...les/morphology_test_cases/complex/cleanup b/tests/morphology_test_cases/complex/cleanup → ...les/morphology_test_cases/complex/cleanup
diff --git a/tests/morphology_test_cases/complex/ctem.in → ...les/morphology_test_cases/complex/ctem.in b/tests/morphology_test_cases/complex/ctem.in → ...les/morphology_test_cases/complex/ctem.in
diff --git a/tests/mare-with-rays-model2/ctem_driver.pro → ...hology_test_cases/complex/ctem_driver.pro b/tests/mare-with-rays-model2/ctem_driver.pro → ...hology_test_cases/complex/ctem_driver.pro
diff --git a/...phology_test_cases/complex/ctem_driver.py → ...phology_test_cases/complex/ctem_driver.py b/...phology_test_cases/complex/ctem_driver.py → ...phology_test_cases/complex/ctem_driver.py
diff --git a/.../mare-with-rays-model2/ctem_image_dem.pro → ...ogy_test_cases/complex/ctem_image_dem.pro b/.../mare-with-rays-model2/ctem_image_dem.pro → ...ogy_test_cases/complex/ctem_image_dem.pro
diff --git a/...h-rays-model2/ctem_image_presentation.pro → ...cases/complex/ctem_image_presentation.pro b/...h-rays-model2/ctem_image_presentation.pro → ...cases/complex/ctem_image_presentation.pro
diff --git a/...-with-rays-model2/ctem_image_regolith.pro → ...est_cases/complex/ctem_image_regolith.pro b/...-with-rays-model2/ctem_image_regolith.pro → ...est_cases/complex/ctem_image_regolith.pro
diff --git a/...-rays-model2/ctem_image_shaded_relief.pro → ...ases/complex/ctem_image_shaded_relief.pro b/...-rays-model2/ctem_image_shaded_relief.pro → ...ases/complex/ctem_image_shaded_relief.pro
diff --git a/...e-with-rays-model2/ctem_io_read_input.pro → ...test_cases/complex/ctem_io_read_input.pro b/...e-with-rays-model2/ctem_io_read_input.pro → ...test_cases/complex/ctem_io_read_input.pro
diff --git a/...are-with-rays-model2/ctem_io_read_old.pro → ...y_test_cases/complex/ctem_io_read_old.pro b/...are-with-rays-model2/ctem_io_read_old.pro → ...y_test_cases/complex/ctem_io_read_old.pro
diff --git a/.../mare-with-rays-model2/ctem_io_readers.py → ...ogy_test_cases/complex/ctem_io_readers.py b/.../mare-with-rays-model2/ctem_io_readers.py → ...ogy_test_cases/complex/ctem_io_readers.py
diff --git a/.../mare-with-rays-model2/ctem_io_writers.py → ...ogy_test_cases/complex/ctem_io_writers.py b/.../mare-with-rays-model2/ctem_io_writers.py → ...ogy_test_cases/complex/ctem_io_writers.py
diff --git a/...-with-rays-model2/ctem_window_display.pro → ...est_cases/complex/ctem_window_display.pro b/...-with-rays-model2/ctem_window_display.pro → ...est_cases/complex/ctem_window_display.pro
diff --git a/tests/morphology_test_cases/complex/getjob → ...ples/morphology_test_cases/complex/getjob b/tests/morphology_test_cases/complex/getjob → ...ples/morphology_test_cases/complex/getjob
diff --git a/...-model2/lunar-MBA-impactor-velocities.dat → ...complex/lunar-MBA-impactor-velocities.dat b/...-model2/lunar-MBA-impactor-velocities.dat → ...complex/lunar-MBA-impactor-velocities.dat
diff --git a/...gy_test_cases/complex/misc/ctem000001.dat → ...gy_test_cases/complex/misc/ctem000001.dat b/...gy_test_cases/complex/misc/ctem000001.dat → ...gy_test_cases/complex/misc/ctem000001.dat
diff --git a/tests/morphology_test_cases/complex/runjob → ...ples/morphology_test_cases/complex/runjob b/tests/morphology_test_cases/complex/runjob → ...ples/morphology_test_cases/complex/runjob
diff --git a/tests/mare-with-rays-model2/start.in → ...es/morphology_test_cases/complex/start.in b/tests/mare-with-rays-model2/start.in → ...es/morphology_test_cases/complex/start.in
diff --git a/...gy_test_cases/complex/surf/surf000000.png → ...gy_test_cases/complex/surf/surf000000.png b/...gy_test_cases/complex/surf/surf000000.png → ...gy_test_cases/complex/surf/surf000000.png
diff --git a/...gy_test_cases/complex/surf/surf000001.png → ...gy_test_cases/complex/surf/surf000001.png b/...gy_test_cases/complex/surf/surf000001.png → ...gy_test_cases/complex/surf/surf000001.png
diff --git a/...hology_test_cases/complex/testprofile.dat → ...hology_test_cases/complex/testprofile.dat b/...hology_test_cases/complex/testprofile.dat → ...hology_test_cases/complex/testprofile.dat
diff --git a/...hology_test_cases/complex/testprofile.plt → ...hology_test_cases/complex/testprofile.plt b/...hology_test_cases/complex/testprofile.plt → ...hology_test_cases/complex/testprofile.plt
diff --git a/examples/morphology_test_cases/simple/CTEM b/examples/morphology_test_cases/simple/CTEM
@@ -0,0 +1 @@
+../../../build/src/CTEM
diff --git a/...logy_test_cases/complex/FassettCounts.txt → ...ology_test_cases/simple/FassettCounts.txt b/...logy_test_cases/complex/FassettCounts.txt → ...ology_test_cases/simple/FassettCounts.txt
diff --git a/...le/LOLASethCraterCatalogv8gt20-binned.dat → ...le/LOLASethCraterCatalogv8gt20-binned.dat b/...le/LOLASethCraterCatalogv8gt20-binned.dat → ...le/LOLASethCraterCatalogv8gt20-binned.dat
diff --git a/...orphology_test_cases/simple/NPFextrap.dat → ...orphology_test_cases/simple/NPFextrap.dat b/...orphology_test_cases/simple/NPFextrap.dat → ...orphology_test_cases/simple/NPFextrap.dat
diff --git a/..._pycache__/ctem_io_readers.cpython-37.pyc → ..._pycache__/ctem_io_readers.cpython-37.pyc b/..._pycache__/ctem_io_readers.cpython-37.pyc → ..._pycache__/ctem_io_readers.cpython-37.pyc
diff --git a/..._pycache__/ctem_io_writers.cpython-37.pyc → ..._pycache__/ctem_io_writers.cpython-37.pyc b/..._pycache__/ctem_io_writers.cpython-37.pyc → ..._pycache__/ctem_io_writers.cpython-37.pyc
diff --git a/tests/morphology_test_cases/simple/cleanup → ...ples/morphology_test_cases/simple/cleanup b/tests/morphology_test_cases/simple/cleanup → ...ples/morphology_test_cases/simple/cleanup
diff --git a/tests/morphology_test_cases/simple/ctem.in → ...ples/morphology_test_cases/simple/ctem.in b/tests/morphology_test_cases/simple/ctem.in → ...ples/morphology_test_cases/simple/ctem.in
diff --git a/...hology_test_cases/complex/ctem_driver.pro → ...phology_test_cases/simple/ctem_driver.pro b/...hology_test_cases/complex/ctem_driver.pro → ...phology_test_cases/simple/ctem_driver.pro
diff --git a/...rphology_test_cases/simple/ctem_driver.py → ...rphology_test_cases/simple/ctem_driver.py b/...rphology_test_cases/simple/ctem_driver.py → ...rphology_test_cases/simple/ctem_driver.py
diff --git a/...ogy_test_cases/complex/ctem_image_dem.pro → ...logy_test_cases/simple/ctem_image_dem.pro b/...ogy_test_cases/complex/ctem_image_dem.pro → ...logy_test_cases/simple/ctem_image_dem.pro
diff --git a/...cases/complex/ctem_image_presentation.pro → ..._cases/simple/ctem_image_presentation.pro b/...cases/complex/ctem_image_presentation.pro → ..._cases/simple/ctem_image_presentation.pro
diff --git a/...est_cases/complex/ctem_image_regolith.pro → ...test_cases/simple/ctem_image_regolith.pro b/...est_cases/complex/ctem_image_regolith.pro → ...test_cases/simple/ctem_image_regolith.pro
diff --git a/...ases/complex/ctem_image_shaded_relief.pro → ...cases/simple/ctem_image_shaded_relief.pro b/...ases/complex/ctem_image_shaded_relief.pro → ...cases/simple/ctem_image_shaded_relief.pro
diff --git a/...test_cases/complex/ctem_io_read_input.pro → ..._test_cases/simple/ctem_io_read_input.pro b/...test_cases/complex/ctem_io_read_input.pro → ..._test_cases/simple/ctem_io_read_input.pro
diff --git a/...y_test_cases/complex/ctem_io_read_old.pro → ...gy_test_cases/simple/ctem_io_read_old.pro b/...y_test_cases/complex/ctem_io_read_old.pro → ...gy_test_cases/simple/ctem_io_read_old.pro
diff --git a/...ogy_test_cases/complex/ctem_io_readers.py → ...logy_test_cases/simple/ctem_io_readers.py b/...ogy_test_cases/complex/ctem_io_readers.py → ...logy_test_cases/simple/ctem_io_readers.py
diff --git a/...ogy_test_cases/complex/ctem_io_writers.py → ...logy_test_cases/simple/ctem_io_writers.py b/...ogy_test_cases/complex/ctem_io_writers.py → ...logy_test_cases/simple/ctem_io_writers.py
diff --git a/...est_cases/complex/ctem_window_display.pro → ...test_cases/simple/ctem_window_display.pro b/...est_cases/complex/ctem_window_display.pro → ...test_cases/simple/ctem_window_display.pro
diff --git a/tests/morphology_test_cases/simple/getjob → examples/morphology_test_cases/simple/getjob b/tests/morphology_test_cases/simple/getjob → examples/morphology_test_cases/simple/getjob
diff --git a/...complex/lunar-MBA-impactor-velocities.dat → .../simple/lunar-MBA-impactor-velocities.dat b/...complex/lunar-MBA-impactor-velocities.dat → .../simple/lunar-MBA-impactor-velocities.dat
diff --git a/...ogy_test_cases/simple/misc/ctem000001.dat → ...ogy_test_cases/simple/misc/ctem000001.dat b/...ogy_test_cases/simple/misc/ctem000001.dat → ...ogy_test_cases/simple/misc/ctem000001.dat
diff --git a/tests/morphology_test_cases/simple/runjob → examples/morphology_test_cases/simple/runjob b/tests/morphology_test_cases/simple/runjob → examples/morphology_test_cases/simple/runjob
diff --git a/tests/morphology_test_cases/complex/start.in → ...les/morphology_test_cases/simple/start.in b/tests/morphology_test_cases/complex/start.in → ...les/morphology_test_cases/simple/start.in
diff --git a/...ogy_test_cases/simple/surf/surf000000.png → ...ogy_test_cases/simple/surf/surf000000.png b/...ogy_test_cases/simple/surf/surf000000.png → ...ogy_test_cases/simple/surf/surf000000.png
diff --git a/...ogy_test_cases/simple/surf/surf000001.png → ...ogy_test_cases/simple/surf/surf000001.png b/...ogy_test_cases/simple/surf/surf000001.png → ...ogy_test_cases/simple/surf/surf000001.png
diff --git a/...phology_test_cases/simple/testprofile.dat → ...phology_test_cases/simple/testprofile.dat b/...phology_test_cases/simple/testprofile.dat → ...phology_test_cases/simple/testprofile.dat
diff --git a/examples/ray-generation-test-environment/CTEM b/examples/ray-generation-test-environment/CTEM
@@ -0,0 +1 @@
+../../build/src/CTEM
diff --git a/...nt/LOLASethCraterCatalogv8gt20-binned.dat → ...nt/LOLASethCraterCatalogv8gt20-binned.dat b/...nt/LOLASethCraterCatalogv8gt20-binned.dat → ...nt/LOLASethCraterCatalogv8gt20-binned.dat
diff --git a/...est-environment/MintonLunarProduction.dat → ...est-environment/MintonLunarProduction.dat b/...est-environment/MintonLunarProduction.dat → ...est-environment/MintonLunarProduction.dat
diff --git a/...st-environment/SinusMedii-data-binned.dat → ...st-environment/SinusMedii-data-binned.dat b/...st-environment/SinusMedii-data-binned.dat → ...st-environment/SinusMedii-data-binned.dat
diff --git a/...environment/Strom-frontside-highlands.csv → ...environment/Strom-frontside-highlands.csv b/...environment/Strom-frontside-highlands.csv → ...environment/Strom-frontside-highlands.csv
diff --git a/...s/ray-generation-test-environment/bar.pro → ...s/ray-generation-test-environment/bar.pro b/...s/ray-generation-test-environment/bar.pro → ...s/ray-generation-test-environment/bar.pro
diff --git a/...s/ray-generation-test-environment/cleanup → ...s/ray-generation-test-environment/cleanup b/...s/ray-generation-test-environment/cleanup → ...s/ray-generation-test-environment/cleanup
diff --git a/...s/ray-generation-test-environment/ctem.in → ...s/ray-generation-test-environment/ctem.in b/...s/ray-generation-test-environment/ctem.in → ...s/ray-generation-test-environment/ctem.in
diff --git a/...neration-test-environment/ctem_driver.pro → ...neration-test-environment/ctem_driver.pro b/...neration-test-environment/ctem_driver.pro → ...neration-test-environment/ctem_driver.pro
diff --git a/...logy_test_cases/simple/ctem_image_dem.pro → ...ation-test-environment/ctem_image_dem.pro b/...logy_test_cases/simple/ctem_image_dem.pro → ...ation-test-environment/ctem_image_dem.pro
diff --git a/..._cases/simple/ctem_image_presentation.pro → ...t-environment/ctem_image_presentation.pro b/..._cases/simple/ctem_image_presentation.pro → ...t-environment/ctem_image_presentation.pro
diff --git a/...-test-environment/ctem_image_regolith.pro → ...-test-environment/ctem_image_regolith.pro b/...-test-environment/ctem_image_regolith.pro → ...-test-environment/ctem_image_regolith.pro
diff --git a/...cases/simple/ctem_image_shaded_relief.pro → ...-environment/ctem_image_shaded_relief.pro b/...cases/simple/ctem_image_shaded_relief.pro → ...-environment/ctem_image_shaded_relief.pro
diff --git a/...n-test-environment/ctem_io_read_input.pro → ...n-test-environment/ctem_io_read_input.pro b/...n-test-environment/ctem_io_read_input.pro → ...n-test-environment/ctem_io_read_input.pro
diff --git a/...gy_test_cases/simple/ctem_io_read_old.pro → ...ion-test-environment/ctem_io_read_old.pro b/...gy_test_cases/simple/ctem_io_read_old.pro → ...ion-test-environment/ctem_io_read_old.pro
diff --git a/...test_cases/simple/ctem_window_display.pro → ...-test-environment/ctem_window_display.pro b/...test_cases/simple/ctem_window_display.pro → ...-test-environment/ctem_window_display.pro
diff --git a/...ronment/lunar-MBA-impactor-velocities.dat → ...ronment/lunar-MBA-impactor-velocities.dat b/...ronment/lunar-MBA-impactor-velocities.dat → ...ronment/lunar-MBA-impactor-velocities.dat
diff --git a/tests/morphology_test_cases/simple/start.in → .../ray-generation-test-environment/start.in b/tests/morphology_test_cases/simple/start.in → .../ray-generation-test-environment/start.in
diff --git a/...neration-test-environment/testprofile.dat → ...neration-test-environment/testprofile.dat b/...neration-test-environment/testprofile.dat → ...neration-test-environment/testprofile.dat
diff --git a/tests/ray-generation-test-environment/CTEM → examples/regolith-transport-run-example/CTEM b/tests/ray-generation-test-environment/CTEM → examples/regolith-transport-run-example/CTEM
diff --git a/...le/LOLASethCraterCatalogv8gt20-binned.dat → ...le/LOLASethCraterCatalogv8gt20-binned.dat b/...le/LOLASethCraterCatalogv8gt20-binned.dat → ...le/LOLASethCraterCatalogv8gt20-binned.dat
diff --git a/...ort-run-example/MintonLunarProduction.dat → ...ort-run-example/MintonLunarProduction.dat b/...ort-run-example/MintonLunarProduction.dat → ...ort-run-example/MintonLunarProduction.dat
diff --git a/...rt-run-example/SinusMedii-data-binned.dat → ...rt-run-example/SinusMedii-data-binned.dat b/...rt-run-example/SinusMedii-data-binned.dat → ...rt-run-example/SinusMedii-data-binned.dat
diff --git a/tests/regolith-transport-run-example/bar.pro → ...es/regolith-transport-run-example/bar.pro b/tests/regolith-transport-run-example/bar.pro → ...es/regolith-transport-run-example/bar.pro
diff --git a/tests/regolith-transport-run-example/cleanup → ...es/regolith-transport-run-example/cleanup b/tests/regolith-transport-run-example/cleanup → ...es/regolith-transport-run-example/cleanup
diff --git a/tests/regolith-transport-run-example/ctem.in → ...es/regolith-transport-run-example/ctem.in b/tests/regolith-transport-run-example/ctem.in → ...es/regolith-transport-run-example/ctem.in
diff --git a/...ith-transport-run-example/ctem_driver.pro → ...ith-transport-run-example/ctem_driver.pro b/...ith-transport-run-example/ctem_driver.pro → ...ith-transport-run-example/ctem_driver.pro
diff --git a/...ation-test-environment/ctem_image_dem.pro → ...-transport-run-example/ctem_image_dem.pro b/...ation-test-environment/ctem_image_dem.pro → ...-transport-run-example/ctem_image_dem.pro
diff --git a/...t-environment/ctem_image_presentation.pro → ...t-run-example/ctem_image_presentation.pro b/...t-environment/ctem_image_presentation.pro → ...t-run-example/ctem_image_presentation.pro
diff --git a/...test_cases/simple/ctem_image_regolith.pro → ...sport-run-example/ctem_image_regolith.pro b/...test_cases/simple/ctem_image_regolith.pro → ...sport-run-example/ctem_image_regolith.pro
diff --git a/...-environment/ctem_image_shaded_relief.pro → ...-run-example/ctem_image_shaded_relief.pro b/...-environment/ctem_image_shaded_relief.pro → ...-run-example/ctem_image_shaded_relief.pro
diff --git a/...nsport-run-example/ctem_io_read_input.pro → ...nsport-run-example/ctem_io_read_input.pro b/...nsport-run-example/ctem_io_read_input.pro → ...nsport-run-example/ctem_io_read_input.pro
diff --git a/...ion-test-environment/ctem_io_read_old.pro → ...ransport-run-example/ctem_io_read_old.pro b/...ion-test-environment/ctem_io_read_old.pro → ...ransport-run-example/ctem_io_read_old.pro
diff --git a/...-test-environment/ctem_window_display.pro → ...sport-run-example/ctem_window_display.pro b/...-test-environment/ctem_window_display.pro → ...sport-run-example/ctem_window_display.pro
diff --git a/...example/lunar-MBA-impactor-velocities.dat → ...example/lunar-MBA-impactor-velocities.dat b/...example/lunar-MBA-impactor-velocities.dat → ...example/lunar-MBA-impactor-velocities.dat
diff --git a/.../ray-generation-test-environment/start.in → ...s/regolith-transport-run-example/start.in b/.../ray-generation-test-environment/start.in → ...s/regolith-transport-run-example/start.in
diff --git a/tests/Minton_et_al_2019_ray2/CTEM b/tests/Minton_et_al_2019_ray2/CTEM
diff --git a/tests/Minton_et_al_2019_ray2/N11_vs_interval.dat b/tests/Minton_et_al_2019_ray2/N11_vs_interval.dat
diff --git a/tests/mare-with-rays-model2/N11_vs_interval.dat b/tests/mare-with-rays-model2/N11_vs_interval.dat
diff --git a/tests/mare-with-rays-model2/RAYPARAMS.txt b/tests/mare-with-rays-model2/RAYPARAMS.txt
diff --git a/tests/mare-with-rays-model2/Robbins2014-A15-FassettCounts-binned.dat b/tests/mare-with-rays-model2/Robbins2014-A15-FassettCounts-binned.dat
diff --git a/tests/mare-with-rays-model2/cleanup b/tests/mare-with-rays-model2/cleanup
diff --git a/tests/mare-with-rays-model2/ctem.in b/tests/mare-with-rays-model2/ctem.in
diff --git a/tests/mare-with-rays-model2/ctem_driver.py b/tests/mare-with-rays-model2/ctem_driver.py