Merge branch 'restructure' of github.itap.purdue.edu:MintonGroup/CTEM…

… into restructure

.gitignore

@@ -6,6 +6,5 @@
 !README.md
 !version.txt
 !src/**.f90
-!ctem/setup.py
-!ctem/ctem/*.py
+!ctem/**.py
 !cmake/Modules/*.cmake

CMakeLists.txt

@@ -29,7 +29,7 @@ ENDIF ()
 OPTION(USE_COARRAY "Use Coarray Fortran for parallelization of test particles" OFF)
 OPTION(USE_OPENMP "Use OpenMP for parallelization" ON)
 OPTION(USE_SIMD "Use SIMD vectorization" ON)
-OPTION(BUILD_SHARED_LIBS "Build using shared libraries" OFF)
+OPTION(BUILD_SHARED_LIBS "Build using shared libraries" ON)
 
 # The following section is modified from Numpy f2py documentation
 IF(PROJECT_SOURCE_DIR STREQUAL PROJECT_BINARY_DIR)

ctem/ctem/driver.py

@@ -52,7 +52,7 @@ def __init__(self, param_file="ctem.in", isnew=True):
         }
 
         # Get the location of the CTEM executable
-        self.ctem_executable = Path(_pyfile).parent.parent.parent.parent / "build" / "src" / "CTEM"
+        self.ctem_executable = Path(_pyfile).parent.parent.parent / "bin" / "CTEM"
         if not self.ctem_executable.exists():
             print(f"CTEM driver not found at {self.ctem_executable}. Trying current directory.")
             self.ctem_executable = Path(currentdir) / "CTEM"

examples/global-lunar-bombardment/ctem_driver.py

@@ -1,4 +1,4 @@
-#!/usr/bin/env python3
-import ctem
-sim = ctem.Simulation()
+#!/usr/bin/env python3
+import ctem
+sim = ctem.Simulation()
 sim.run()