Merge branch 'master' into develop

.gitignore

@@ -1,45 +1,16 @@
-
-autom4te.cache/output.*
-autom4te.cache/traces.*
-autom4te.cache/requests
-Makefile.in
-
-*.o
-
-
-build/src/CTEM
-
-*.mod
-
-*.swp
-
-
-build/
-
-configure
-
-config/
-
-examples/global-lunar-bombardment/.DS_Store
-
-examples/mare-with-rays-model2/.DS_Store
-
-__pycache__/
-
-*.dat
-
-*.DS_Store
-
-alocal.m4
-
-*.m4
-
-*.eps
-
-examples/mare-with-rays-model2/CTEM
-
-examples/global-lunar-bombardment/CTEM
-
-examples/*/*.o*
-
-*.out
+*
+!src/
+!src/*/
+!*.f90
+!.gitignore
+!CMakeLists.txt
+!distclean.cmake
+!README.md
+!version.txt
+!ctem/
+!ctem/**.py
+!cmake/Modules/*.cmake
+!*.bash
+
+!pyproject.toml
+!LICENSE

CMakeLists.txt

@@ -0,0 +1,88 @@
+# Copyright 2022 - David Minton, Carlisle Wishard, Jennifer Pouplin, Jake Elliott, & Dana Singh
+# This file is part of Swiftest.
+# Swiftest is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License 
+# as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+# Swiftest is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty 
+# of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.
+# You should have received a copy of the GNU General Public License along with Swiftest. 
+# If not, see: https://www.gnu.org/licenses. 
+
+# CMake project file for Swiftest
+##################################################
+# Define the project and the depencies that it has
+##################################################
+CMAKE_MINIMUM_REQUIRED(VERSION 3.24.0...3.27.1)
+SET(SKBUILD_PROJECT_NAME "ctem" CACHE STRING "Name of project set by scikit-build")
+
+# Get version stored in text file
+FILE(READ "version.txt" VERSION)
+PROJECT(${SKBUILD_PROJECT_NAME} LANGUAGES C Fortran VERSION ${VERSION})
+
+IF (CMAKE_Fortran_COMPILER_ID MATCHES "^Intel")
+    SET(COMPILER_OPTIONS "Intel" CACHE STRING "Compiler identified as Intel")
+ELSEIF (CMAKE_Fortran_COMPILER_ID STREQUAL "GNU")
+    SET(COMPILER_OPTIONS "GNU" CACHE STRING "Compiler identified as gfortran")
+ELSE ()
+    MESSAGE(FATAL_ERROR "Compiler ${CMAKE_Fortran_COMPILER_ID} not recognized!") 
+ENDIF ()
+
+# Set some options the user may choose
+OPTION(USE_OPENMP "Use OpenMP for parallelization" ON)
+OPTION(USE_SIMD "Use SIMD vectorization" ON)
+OPTION(BUILD_SHARED_LIBS "Build using shared libraries" ON)
+
+# The following section is modified from Numpy f2py documentation
+IF(PROJECT_SOURCE_DIR STREQUAL PROJECT_BINARY_DIR)
+  MESSAGE(FATAL_ERROR "In-source builds not allowed. Please make a new directory (called a build directory) and run CMake from there.\n")
+ENDIF()
+
+# Ensure scikit-build modules
+FIND_PACKAGE(Python COMPONENTS Interpreter Development.Module REQUIRED)
+
+# Define some directories that are important to the build
+SET(SRC "${CMAKE_SOURCE_DIR}/src")
+SET(PY "${CMAKE_SOURCE_DIR}/ctem")
+
+# Make sure paths are correct for Unix or Windows style
+FILE(TO_CMAKE_PATH ${SRC} SRC)
+FILE(TO_CMAKE_PATH ${PY} PY)
+
+INCLUDE(GNUInstallDirs)
+IF (SKBUILD)
+    SET(INSTALL_BINDIR ${SKBUILD_SCRIPTS_DIR})
+    SET(INSTALL_LIBDIR ${SKBUILD_DATA_DIR}/lib) 
+    SET(INSTALL_INCLUDEDIR ${SKBUILD_HEADERS_DIR}) 
+    SET(INSTALL_PYPROJ ${SKBUILD_PLATLIB_DIR}/${SKBUILD_PROJECT_NAME}) 
+    IF (APPLE)
+        SET(CMAKE_INSTALL_RPATH "@loader_path;${CMAKE_BINARY_DIR}/bin")
+    ELSEIF (LINUX)
+        SET(CMAKE_INSTALL_RPATH "@ORIGIN;${CMAKE_BINARY_DIR}/bin")
+    ENDIF ()
+ELSE ()
+    SET(INSTALL_PYPROJ ${PY})
+    SET(INSTALL_BINDIR ${CMAKE_INSTALL_BINDIR})
+    SET(INSTALL_LIBDIR ${CMAKE_INSTALL_LIBDIR})
+    SET(INSTALL_INCLUDEDIR ${CMAKE_INSTALL_INCLUDEDIR})
+ENDIF ()
+
+SET(CMAKE_INSTALL_RPATH_USE_LINK_PATH TRUE)
+
+# Have the .mod files placed in the lib folder
+SET(CMAKE_Fortran_MODULE_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}/mod)
+
+# Add our local modules to the module path
+FILE(TO_CMAKE_PATH "${CMAKE_SOURCE_DIR}/cmake/Modules" LOCAL_MODULE_PATH)
+LIST(APPEND CMAKE_MODULE_PATH ${LOCAL_MODULE_PATH})
+
+# Set the name of the ctem library
+SET(CTEM_LIBRARY ctem)
+
+# The source for the CTEM binary and have it placed in the bin folder
+ADD_SUBDIRECTORY(${SRC} ${BIN})
+
+#ADD_SUBDIRECTORY(${PY})
+
+# Add a distclean target to the Makefile
+ADD_CUSTOM_TARGET(distclean 
+    COMMAND ${CMAKE_COMMAND} -P "${CMAKE_SOURCE_DIR}/distclean.cmake"
+)