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Updated NetCDF reads from the profiling branch
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@daminton
daminton committed Nov 24, 2021
1 parent 77e439d commit 8eac6a0
Showing 1 changed file with 46 additions and 41 deletions.
87 changes: 46 additions & 41 deletions src/netcdf/netcdf.f90
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Original file line number Diff line number Diff line change
Expand Up @@ -250,7 +250,8 @@ module subroutine netcdf_initialize_output(self, param)

call check( nf90_def_var(self%ncid, ORIGIN_TIME_VARNAME, self%out_type, self%id_dimid, self%origin_time_varid) )
!call check( nf90_def_var_chunking(self%ncid, self%origin_time_varid, NF90_CHUNKED, [self%id_chunk]) )
call check( nf90_def_var(self%ncid, ORIGIN_TYPE_VARNAME, NF90_CHAR, [self%str_dimid, self%id_dimid], self%origin_type_varid) )
call check( nf90_def_var(self%ncid, ORIGIN_TYPE_VARNAME, NF90_CHAR, [self%str_dimid, self%id_dimid], &
self%origin_type_varid) )
!call check( nf90_def_var_chunking(self%ncid, self%origin_type_varid, NF90_CHUNKED, [NAMELEN, self%id_chunk]) )
call check( nf90_def_var(self%ncid, ORIGIN_XHX_VARNAME, self%out_type, self%id_dimid, self%origin_xhx_varid) )
!call check( nf90_def_var_chunking(self%ncid, self%origin_xhx_varid, NF90_CHUNKED, [self%id_chunk]) )
Expand Down Expand Up @@ -543,113 +544,115 @@ module function netcdf_read_frame_system(self, iu, param) result(ierr)
! Now read in each variable and split the outputs by body type
if ((param%in_form == XV) .or. (param%in_form == XVEL)) then
call check( nf90_get_var(iu%ncid, iu%xhx_varid, rtemp, start=[1, tslot]) )
pl%xh(1,:) = pack(rtemp, plmask)
tp%xh(1,:) = pack(rtemp, tpmask)
if (npl > 0) pl%xh(1,:) = pack(rtemp, plmask)
if (ntp > 0) tp%xh(1,:) = pack(rtemp, tpmask)

call check( nf90_get_var(iu%ncid, iu%xhy_varid, rtemp, start=[1, tslot]) )
pl%xh(2,:) = pack(rtemp, plmask)
tp%xh(2,:) = pack(rtemp, tpmask)
if (npl > 0) pl%xh(2,:) = pack(rtemp, plmask)
if (ntp > 0) tp%xh(2,:) = pack(rtemp, tpmask)

call check( nf90_get_var(iu%ncid, iu%xhz_varid, rtemp, start=[1, tslot]) )
pl%xh(3,:) = pack(rtemp, plmask)
tp%xh(3,:) = pack(rtemp, tpmask)
if (npl > 0) pl%xh(3,:) = pack(rtemp, plmask)
if (ntp > 0) tp%xh(3,:) = pack(rtemp, tpmask)

call check( nf90_get_var(iu%ncid, iu%vhx_varid, rtemp, start=[1, tslot]) )
pl%vh(1,:) = pack(rtemp, plmask)
tp%vh(1,:) = pack(rtemp, tpmask)
if (npl > 0) pl%vh(1,:) = pack(rtemp, plmask)
if (ntp > 0) tp%vh(1,:) = pack(rtemp, tpmask)

call check( nf90_get_var(iu%ncid, iu%vhy_varid, rtemp, start=[1, tslot]) )
pl%vh(2,:) = pack(rtemp, plmask)
tp%vh(2,:) = pack(rtemp, tpmask)
if (npl > 0) pl%vh(2,:) = pack(rtemp, plmask)
if (ntp > 0) tp%vh(2,:) = pack(rtemp, tpmask)

call check( nf90_get_var(iu%ncid, iu%vhz_varid, rtemp, start=[1, tslot]) )
pl%vh(3,:) = pack(rtemp, plmask)
tp%vh(3,:) = pack(rtemp, tpmask)
if (npl > 0) pl%vh(3,:) = pack(rtemp, plmask)
if (ntp > 0) tp%vh(3,:) = pack(rtemp, tpmask)
end if

if ((param%in_form == EL) .or. (param%in_form == XVEL)) then

call check( nf90_get_var(iu%ncid, iu%a_varid, rtemp, start=[1, tslot]) )
pl%a(:) = pack(rtemp, plmask)
tp%a(:) = pack(rtemp, tpmask)
if (npl > 0) pl%a(:) = pack(rtemp, plmask)
if (ntp > 0) tp%a(:) = pack(rtemp, tpmask)

call check( nf90_get_var(iu%ncid, iu%e_varid, rtemp, start=[1, tslot]) )
pl%e(:) = pack(rtemp, plmask)
tp%e(:) = pack(rtemp, tpmask)
if (npl > 0) pl%e(:) = pack(rtemp, plmask)
if (ntp > 0) tp%e(:) = pack(rtemp, tpmask)

call check( nf90_get_var(iu%ncid, iu%inc_varid, rtemp, start=[1, tslot]) )
pl%inc(:) = pack(rtemp, plmask)
tp%inc(:) = pack(rtemp, tpmask)
if (npl > 0) pl%inc(:) = pack(rtemp, plmask)
if (ntp > 0) tp%inc(:) = pack(rtemp, tpmask)

call check( nf90_get_var(iu%ncid, iu%capom_varid, rtemp, start=[1, tslot]) )
pl%capom(:) = pack(rtemp, plmask)
tp%capom(:) = pack(rtemp, tpmask)
if (npl > 0) pl%capom(:) = pack(rtemp, plmask)
if (ntp > 0) tp%capom(:) = pack(rtemp, tpmask)

call check( nf90_get_var(iu%ncid, iu%omega_varid, rtemp, start=[1, tslot]) )
pl%omega(:) = pack(rtemp, plmask)
tp%omega(:) = pack(rtemp, tpmask)
if (npl > 0) pl%omega(:) = pack(rtemp, plmask)
if (ntp > 0) tp%omega(:) = pack(rtemp, tpmask)

call check( nf90_get_var(iu%ncid, iu%capm_varid, rtemp, start=[1, tslot]) )
pl%capm(:) = pack(rtemp, plmask)
tp%capm(:) = pack(rtemp, tpmask)
if (npl > 0) pl%capm(:) = pack(rtemp, plmask)
if (ntp > 0) tp%capm(:) = pack(rtemp, tpmask)

end if

call check( nf90_get_var(iu%ncid, iu%Gmass_varid, rtemp, start=[1, tslot]) )
cb%Gmass = rtemp(1)
cb%mass = cb%Gmass / param%GU

pl%Gmass(:) = pack(rtemp, plmask)
pl%mass(:) = pl%Gmass(:) / param%GU
if (npl > 0) then
pl%Gmass(:) = pack(rtemp, plmask)
pl%mass(:) = pl%Gmass(:) / param%GU

if (param%lrhill_present) then
call check( nf90_get_var(iu%ncid, iu%rhill_varid, rtemp, start=[1, tslot]) )
pl%rhill(:) = pack(rtemp, plmask)
if (param%lrhill_present) then
call check( nf90_get_var(iu%ncid, iu%rhill_varid, rtemp, start=[1, tslot]) )
pl%rhill(:) = pack(rtemp, plmask)
end if
end if

if (param%lclose) then
call check( nf90_get_var(iu%ncid, iu%radius_varid, rtemp, start=[1, tslot]) )
cb%radius = rtemp(1)
pl%radius(:) = pack(rtemp, plmask)
if (npl > 0) pl%radius(:) = pack(rtemp, plmask)
else
cb%radius = param%rmin
pl%radius(:) = 0.0_DP
if (npl > 0) pl%radius(:) = 0.0_DP
end if

if (param%lrotation) then
call check( nf90_get_var(iu%ncid, iu%Ip1_varid, rtemp, start=[1, tslot]) )
cb%Ip(1) = rtemp(1)
pl%Ip(1,:) = pack(rtemp, plmask)
if (npl > 0) pl%Ip(1,:) = pack(rtemp, plmask)

call check( nf90_get_var(iu%ncid, iu%Ip2_varid, rtemp, start=[1, tslot]) )
cb%Ip(2) = rtemp(1)
pl%Ip(2,:) = pack(rtemp, plmask)
if (npl > 0) pl%Ip(2,:) = pack(rtemp, plmask)

call check( nf90_get_var(iu%ncid, iu%Ip3_varid, rtemp, start=[1, tslot]) )
cb%Ip(3) = rtemp(1)
pl%Ip(3,:) = pack(rtemp, plmask)
if (npl > 0) pl%Ip(3,:) = pack(rtemp, plmask)

call check( nf90_get_var(iu%ncid, iu%rotx_varid, rtemp, start=[1, tslot]) )
cb%rot(1) = rtemp(1)
pl%rot(1,:) = pack(rtemp, plmask)
if (npl > 0) pl%rot(1,:) = pack(rtemp, plmask)

call check( nf90_get_var(iu%ncid, iu%roty_varid, rtemp, start=[1, tslot]) )
cb%rot(2) = rtemp(1)
pl%rot(2,:) = pack(rtemp, plmask)
if (npl > 0) pl%rot(2,:) = pack(rtemp, plmask)

call check( nf90_get_var(iu%ncid, iu%rotz_varid, rtemp, start=[1, tslot]) )
cb%rot(3) = rtemp(1)
pl%rot(3,:) = pack(rtemp, plmask)
if (npl > 0) pl%rot(3,:) = pack(rtemp, plmask)
end if

if (param%ltides) then
call check( nf90_get_var(iu%ncid, iu%k2_varid, rtemp, start=[1, tslot]) )
cb%k2 = rtemp(1)
pl%k2(:) = pack(rtemp, plmask)
if (npl > 0) pl%k2(:) = pack(rtemp, plmask)

call check( nf90_get_var(iu%ncid, iu%Q_varid, rtemp, start=[1, tslot]) )
cb%Q = rtemp(1)
pl%Q(:) = pack(rtemp, plmask)
if (npl > 0) pl%Q(:) = pack(rtemp, plmask)
end if

call self%read_particle_info(iu, param, plmask, tpmask)
Expand Down Expand Up @@ -936,7 +939,9 @@ module subroutine netcdf_write_frame_base(self, iu, param)
select type(self)
class is (swiftest_pl) ! Additional output if the passed polymorphic object is a massive body
call check( nf90_put_var(iu%ncid, iu%Gmass_varid, self%Gmass(j), start=[idslot, tslot]) )
if (param%lrhill_present) call check( nf90_put_var(iu%ncid, iu%rhill_varid, self%rhill(j), start=[idslot, tslot]) )
if (param%lrhill_present) then
call check( nf90_put_var(iu%ncid, iu%rhill_varid, self%rhill(j), start=[idslot, tslot]) )
end if
if (param%lclose) call check( nf90_put_var(iu%ncid, iu%radius_varid, self%radius(j), start=[idslot, tslot]) )
if (param%lrotation) then
call check( nf90_put_var(iu%ncid, iu%Ip1_varid, self%Ip(1, j), start=[idslot, tslot]) )
Expand Down

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