Added flags to ensure that host environment variables don't get passe…

…d down to the container in Apptainer/Singularity (which wreaks havoc on the RCAC cluster)
MintonGroup · Jun 7, 2023 · afb2c9f · afb2c9f
1 parent 49e77a3
commit afb2c9f
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/apptainer/bin/swiftest b/apptainer/bin/swiftest
@@ -1,4 +1,4 @@
 #!/bin/sh --
 OMP_NUM_THREADS=${OMP_NUM_THREADS:-`nproc --all`}
 FOR_COARRAY_NUM_IMAGES=${FOR_COARRAY_NUM_IMAGES:-1}
-apptainer run --bind $(pwd):$(pwd) --env OMP_NUM_THREADS=${OMP_NUM_THREADS},FOR_COARRAY_NUM_IMAGES=${FOR_COARRAY_NUM_IMAGES} ${SWIFTEST_SIF} "$@"
+apptainer run --bind $(pwd):$(pwd) --cleanenv --env OMP_NUM_THREADS=${OMP_NUM_THREADS},FOR_COARRAY_NUM_IMAGES=${FOR_COARRAY_NUM_IMAGES} ${SWIFTEST_SIF} "$@"
diff --git a/singularity/bin/swiftest b/singularity/bin/swiftest
@@ -1,4 +1,4 @@
 #!/bin/sh --
 OMP_NUM_THREADS=${OMP_NUM_THREADS:-`nproc --all`}
 FOR_COARRAY_NUM_IMAGES=${FOR_COARRAY_NUM_IMAGES:-1}
-singularity run --bind $(pwd):$(pwd) --env OMP_NUM_THREADS=${OMP_NUM_THREADS},FOR_COARRAY_NUM_IMAGES=${FOR_COARRAY_NUM_IMAGES} ${SWIFTEST_SIF} "$@"
+singularity run --bind $(pwd):$(pwd) --cleanenv --env OMP_NUM_THREADS=${OMP_NUM_THREADS},FOR_COARRAY_NUM_IMAGES=${FOR_COARRAY_NUM_IMAGES} ${SWIFTEST_SIF} "$@"